Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0762
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_5519| Best HMM Match : WIF (HMM E-Value=4.6)                        27   8.6  
SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_3632| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_3544| Best HMM Match : 7tm_1 (HMM E-Value=2.7e-34)                  27   8.6  

>SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 13  LFSIKTFLICDVIVSGTYVNLITSKRRSPRGVGVGPNRAVNAG-RLPISLRPIPMYTG 183
           LFSI  F+I  V++  TY +++ + RR  R   +G    +NAG R  IS      +TG
Sbjct: 189 LFSISVFIIPLVVMIWTYSHIMKAARRQAR---IGNIAVLNAGFRSSISSTGSGQFTG 243


>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2033

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -3

Query: 440  YDIEMPGASN*SYPIEYVISSFTTHVIKELQSVEKNI*EQELSSLNVWEGA--ISISRTD 267
            Y  ++P     SYP  Y   +  T+    + S+E N+  Q+L++++ W  A  ++++++ 
Sbjct: 1039 YINDLPNCLVNSYPHIYADDTHLTYASNNVGSIESNL-NQDLANVSDWLKANKLTLNKSK 1097

Query: 266  FLFYCVGS 243
              F  VGS
Sbjct: 1098 TEFMLVGS 1105


>SB_5519| Best HMM Match : WIF (HMM E-Value=4.6)
          Length = 347

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 131 STRGAFQFHCDQSRCTLATNKK*PSAISDV 220
           S  G F F+CD    TL+ N K PS   DV
Sbjct: 40  SVGGTFLFYCDFEIKTLSLNLKLPSFYKDV 69


>SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 116 PTPTPLGDRRLLVIKLTYVPETITSHMRNV 27
           P P PLG     V  LT+ P T TS   NV
Sbjct: 725 PPPPPLGRDSAAVFMLTWTPLTNTSSAANV 754


>SB_3632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 1   TTFGLFSIKTFLICDVIVSGTYVNLITSKRRSPRGVGVGPNRAVNAGR 144
           T + L +I  FL+  +IVSG Y++L+  + R      V  N +   GR
Sbjct: 127 TDYALSTIHRFLLIKLIVSG-YISLLIGRNRRVLAACVYTNLSRRVGR 173


>SB_3544| Best HMM Match : 7tm_1 (HMM E-Value=2.7e-34)
          Length = 334

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 330 LRARAIKFKRVGRRYFYFTNGLSILLCRKRVPNATLVTSLIALGYFLFVASVHR 169
           L A  +   R+G R      G ++  C+   PN    T+LIA G  L V SV R
Sbjct: 74  LTALHVGLSRIGGRV-----GANVFFCKVVDPNTLSNTALIATGLTLTVLSVER 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,226,275
Number of Sequences: 59808
Number of extensions: 286169
Number of successful extensions: 688
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)