Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0762
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82054-4|CAB04842.1|  453|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z82054-1|CAB04840.1|  453|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81109-18|CAB03255.1|  453|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p...    27   7.6  

>Z82054-4|CAB04842.1|  453|Caenorhabditis elegans Hypothetical
           protein R10D12.15 protein.
          Length = 453

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 103 GVGVGPNRAVNAGRLPISLRPIPMYTGHE 189
           G  VGP   ++ G++P+ L  IP Y  ++
Sbjct: 356 GSPVGPEHTLSCGKMPVKLNAIPHYQSYQ 384


>Z82054-1|CAB04840.1|  453|Caenorhabditis elegans Hypothetical
           protein T26F2.1 protein.
          Length = 453

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 103 GVGVGPNRAVNAGRLPISLRPIPMYTGHE 189
           G  VGP   ++ G++P+ L  IP Y  ++
Sbjct: 356 GSPVGPEHTLSCGKMPVKLNAIPHYQSYQ 384


>Z81109-18|CAB03255.1|  453|Caenorhabditis elegans Hypothetical
           protein R10D12.15 protein.
          Length = 453

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 103 GVGVGPNRAVNAGRLPISLRPIPMYTGHE 189
           G  VGP   ++ G++P+ L  IP Y  ++
Sbjct: 356 GSPVGPEHTLSCGKMPVKLNAIPHYQSYQ 384


>Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical
           protein R17.3 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 203 SAISDVTNVALGTRFRHNKIES 268
           SA+ D+T VAL   +RHNK  S
Sbjct: 302 SALDDITTVALILDYRHNKTRS 323


>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical
           protein C01G12.8 protein.
          Length = 1049

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 179 VYIGIG-RNEIGRRPALTARFGPTPTPL 99
           + IG G R  +GR  ALT +  P PTPL
Sbjct: 275 IIIGTGDRTFVGRIAALTTQVDPGPTPL 302


>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
           protein C01G12.8 protein.
          Length = 1049

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 179 VYIGIG-RNEIGRRPALTARFGPTPTPL 99
           + IG G R  +GR  ALT +  P PTPL
Sbjct: 275 IIIGTGDRTFVGRIAALTTQVDPGPTPL 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,082
Number of Sequences: 27780
Number of extensions: 216074
Number of successful extensions: 566
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)