Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0758
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 28 1.4
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 27 2.4
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 27 2.4
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.4
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 4.3
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 5.6
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 7.5
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 25 9.9
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 9.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 9.9
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 105 FDDDPIKQLQTLKSNADYNVPDPMLIPKDKLNL--ILASPGKEIMNLLSSRPEL 260
++ D ++ Q LKS D+N D +L+P L + I+ E+ ++LS+ EL
Sbjct: 40 YNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKEL 93
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 303 GLAARQEKRMPPGAAIPALNSISSL 229
G + EKR+P G + AL +ISS+
Sbjct: 158 GFVVKHEKRLPDGPRVLALRAISSV 182
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 259 NSGLELNKFIISLPGEASIKFNLSFGINIGSGTL*SAFD 143
NSG+EL +I P K L G G ++ SAFD
Sbjct: 59 NSGIELANYIDKNPDTVRAKKVLELGAGAGLPSIVSAFD 97
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 258 IPALNSISSLFLCRERQVSNLTYPSGSTSG 169
+P S LF+C E+ VSN + ++SG
Sbjct: 506 LPDFQSADDLFVCVEKSVSNFVQITANSSG 535
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 60 CGEVKPKKIEWPAFNFDDDPIKQLQTLK-SNA 152
C E PK + W F D P+ Q ++K SNA
Sbjct: 378 CYEADPKNLYWDKDKFSDIPVLQHISMKPSNA 409
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/33 (24%), Positives = 16/33 (48%)
Frame = +3
Query: 87 EWPAFNFDDDPIKQLQTLKSNADYNVPDPMLIP 185
+WP +N+ DP+ + +S N ++ P
Sbjct: 17 QWPPYNYKSDPLVNSKLSQSTTSVNAGPSLISP 49
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.5
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Frame = -1
Query: 343 IVSNCDNDMTSTSGSCSTAGKANASGS-CNSGLELNKFIISLPGEASIKFNLSFGINIGS 167
+V + +M S+S S S ++A S S + + ++S +S+ + ++
Sbjct: 332 VVVDYSEEMASSSSSASATATSSAESSIATSPITSSSNVVSSISTSSMDSSAVSSYSVVQ 391
Query: 166 GTL*SAFDLRVCSCLIGSSSKLNAGHSIFLGLTSPHLLNTLFILARSSVD 17
+L S + + S S LN+G S L + +L RSS+D
Sbjct: 392 SSLASIISN---AYIATSKSGLNSGVSTLLASPTSSSTFVTSLLRRSSID 438
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 572 TLSHSIRGGSQLFAELKFLESIKFFQD 652
TLS G SQL EL+F++ K QD
Sbjct: 419 TLSSKFDGLSQLQVELRFVQERKVAQD 445
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 576 KVATACG*VHPRSRRQCPQLRHPSTVSALGDS 481
++ CG H R CP LR+ + L DS
Sbjct: 1331 EICFLCGTPHFSGRDTCPMLRNKEAIYRLKDS 1362
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +1
Query: 61 AEKLNLKRSNGPR-SISTTTLSNSYR 135
A++++++ S P+ SISTTT +SYR
Sbjct: 262 AKQISVQPSEHPKPSISTTTTGSSYR 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,130
Number of Sequences: 5004
Number of extensions: 46042
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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