Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0758
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321...    30   1.9  
02_01_0427 - 3124209-3124307,3124453-3125240,3125510-3125867,312...    30   1.9  
06_01_0602 - 4342333-4342790,4342899-4345623                           29   3.3  
01_06_0363 - 28745581-28745709,28746043-28746114,28746373-287464...    29   3.3  
03_05_0356 - 23421394-23421870                                         29   4.4  
02_01_0429 - 3132848-3135043                                           28   7.7  
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311...    28   7.7  

>04_04_1028 +
           30230224-30231274,30231500-30231609,30232144-30232170,
           30233107-30234252
          Length = 777

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -1

Query: 313 STSGSCSTAGKANASGSCNSGLELNKFIISLPGEASIKFNLSFGINIGSGTL*SAFDL 140
           ST+GSC+T G+ N+ G C      + + + L     + F  +      +GT  +AF L
Sbjct: 182 STNGSCTTNGRVNSDGLCPGTACCDAYGMPLDDAQEVTFEFNKTSASVAGTCSAAFIL 239


>02_01_0427 -
           3124209-3124307,3124453-3125240,3125510-3125867,
           3125902-3126567
          Length = 636

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 206 TCLSRQRNNELIEFKAGIAAPGGIRFSCRAARPRCT 313
           +C + + NN L++F AG++  GG+  S R     C+
Sbjct: 19  SCCTERENNCLLQFLAGLSQDGGLAASWRLGTDCCS 54


>06_01_0602 - 4342333-4342790,4342899-4345623
          Length = 1060

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 358 F*FSKIVSNCDNDMTSTSGSCSTAGKANASGSCNS 254
           F  +K+V N D D+T+ SGS + A    +S  CNS
Sbjct: 864 FGIAKLVKNADGDVTTNSGSIAAA----SSDPCNS 894


>01_06_0363 -
           28745581-28745709,28746043-28746114,28746373-28746417,
           28746523-28746618,28747029-28747080,28747232-28747305,
           28747386-28747502,28747844-28747930,28748186-28748281,
           28748508-28748654
          Length = 304

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 63  GEVKPKKIEWPAFNFDDDPIKQLQTLKSNADYNV 164
           G +K + ++ P+F+F+DD I   Q L+S  DYNV
Sbjct: 25  GTLKAELLKDPSFDFNDDAI---QWLESMLDYNV 55


>03_05_0356 - 23421394-23421870
          Length = 158

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 300 LAARQEKRMPPGAAIPALNSISS 232
           +A ++ K+MPP AA PAL  I+S
Sbjct: 103 VARKETKKMPPAAASPALADIAS 125


>02_01_0429 - 3132848-3135043
          Length = 731

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 203 DTCLSRQRNNELIEFKAGIAAPGGIRFSCRAARPRCT 313
           D+C+ ++++  L++F AG++  GG+  S R     CT
Sbjct: 35  DSCIDQEKS-VLLQFLAGLSGDGGLSASWRNGTNCCT 70


>02_01_0425 -
           3102629-3104692,3106505-3108546,3109918-3109989,
           3110157-3111444
          Length = 1821

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 203 DTCLSRQRNNELIEFKAGIAAPGGIRFSCRAARPRCT 313
           D+C+ ++++  L++F AG++  GG+  S R     CT
Sbjct: 458 DSCIDQEKS-VLLQFLAGLSGDGGLSASWRNGTNCCT 493


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,254,568
Number of Sequences: 37544
Number of extensions: 319453
Number of successful extensions: 930
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)