Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0758
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 29   3.4  
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)                     29   3.4  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)                 28   7.9  

>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 1413

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 334 NCDNDMTSTSGSCSTAGKANASGSC 260
           +CD+D+ ++SG C      N+SG C
Sbjct: 41  SCDDDVNNSSGCCCDDDVKNSSGGC 65



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 331 CDNDMTSTSGSCSTAGKANASGSC 260
           CD+D+ ++SG C      N+SG C
Sbjct: 66  CDDDVNNSSGGCCDDDVNNSSGGC 89



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 331 CDNDMTSTSGSCSTAGKANASGSC 260
           CD+D+ ++SG C      N+SG C
Sbjct: 78  CDDDVNNSSGGCCDDDVNNSSGGC 101



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 331 CDNDMTSTSGSCSTAGKANASGSC 260
           CD+D+ ++SG C      N+SG C
Sbjct: 90  CDDDVNNSSGGCCDDDVNNSSGGC 113



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 331 CDNDMTSTSGSCSTAGKANASGSC 260
           CD+D+ ++SG C      N+SG C
Sbjct: 102 CDDDVNNSSGGCCDDDVNNSSGGC 125



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 331 CDNDMTSTSGSCSTAGKANASGSC 260
           CD+D+ ++SG C      N+SG C
Sbjct: 54  CDDDVKNSSGGCCDDDVNNSSGGC 77


>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 800

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/46 (26%), Positives = 18/46 (39%)
 Frame = -1

Query: 343 IVSNCDNDMTSTSGSCSTAGKANASGSCNSGLELNKFIISLPGEAS 206
           ++ +C  D    +G+C   G  N +  C  G   N      PG  S
Sbjct: 153 LIESCQEDQCKNNGTCQYLGNGNYTCECLEGFNGNNCEKDRPGSES 198


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 222  KEIMNLLSSRPELQLPEAFAFPAVLQDPDVLVISLSQLETILEN 353
            K+I  L++    ++ PE F F  +  DP V ++  +   TI++N
Sbjct: 6373 KKIGVLIADDKLIEGPETFGFELMSDDPRVTIVRKTSTVTIIDN 6416


>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
          Length = 2253

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +3

Query: 57   KCGEVKPKKIEWPAFNFDDDP-----IKQLQTLKSNADYNVPD 170
            K GE++P   +W   NF D P     I  + TL + AD + P+
Sbjct: 1390 KQGEIEPTVYQWKRLNFVDKPAPDFAISCVNTLANMADTHFPE 1432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,436,157
Number of Sequences: 59808
Number of extensions: 355288
Number of successful extensions: 1060
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)