Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0757
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991,430... 29 1.8
06_03_0612 + 22735613-22735643,22735747-22735849,22737154-227375... 29 1.8
02_05_0611 + 30344637-30344652,30344743-30344883,30345258-303455... 29 1.8
11_01_0788 + 6599962-6602700 29 2.4
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 28 4.3
06_01_0035 + 358669-359007,359458-359617,359723-360582 28 4.3
02_02_0631 - 12397517-12398452,12398693-12398819,12398971-123991... 28 5.6
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 28 5.6
07_01_0319 + 2245724-2245753,2246797-2246976,2247547-2247630 27 9.9
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047... 27 9.9
01_06_1792 - 39912714-39913559 27 9.9
>10_02_0023 +
4306350-4306908,4308429-4308814,4308917-4308991,
4309330-4309539,4309649-4309961,4310035-4310130,
4310220-4310357,4310436-4310536,4310645-4310712,
4310800-4310849,4311790-4311848,4312399-4312530
Length = 728
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = -2
Query: 383 TSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEN-LKHTKDTCGGKRIFKKA 207
TST K + K+ K + N + S E+ +K + E + +K +R KKA
Sbjct: 485 TSTHSKGKAKVGKRQ-NTSIDERPSKKSRESGESKLTSQDEGEVGKSKSKSVNERPLKKA 543
Query: 206 DVHCDEPKLPLKR--KSPRVNQRTETKK 129
+ D+ KLP + + P+ + R++ K+
Sbjct: 544 SKNRDDVKLPSQSGLEEPQTSNRSKRKR 571
>06_03_0612 +
22735613-22735643,22735747-22735849,22737154-22737511,
22737592-22738033,22738146-22738189,22738293-22738340
Length = 341
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = -2
Query: 437 ISPKVNTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEN 258
+SPK N K + L D + K + KKP+ + + + K+ +
Sbjct: 229 VSPKGNLKPRSLNSDAAQSKEAAKKDNIQKKPDAKVRGSYNRNPAKEAITKNTGKKAKKQ 288
Query: 257 LKHTKDTCGG 228
+K K+ C G
Sbjct: 289 VKGQKEDCNG 298
>02_05_0611 +
30344637-30344652,30344743-30344883,30345258-30345572,
30345907-30346053,30346446-30346543,30346719-30346805,
30346870-30347080,30347589-30347674
Length = 366
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 395 DKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENLKHTK 243
D+IN TP+ +D+ E NN E+ E + K KS ++ K K
Sbjct: 121 DRINAGTPKLKKDRRSSDEPNNADEVLHGNQDEETPTEKTKKSGKSSKKDK 171
>11_01_0788 + 6599962-6602700
Length = 912
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -2
Query: 395 DKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENLKHT-KDTCGG 228
D + T H+ KLK E N+ F+L T + +K + E L H D C G
Sbjct: 317 DDVATLAYPTHRLKLKPLEHNDAFDLFCKKTFYNSMHSKCPQDLEKLAHNIVDRCEG 373
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 28.3 bits (60), Expect = 4.3
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -2
Query: 395 DKINTSTPQKHQ--DKLKKPEFNNQFELHSDATSNENNSTKASKSYENLKHTKDTCGGKR 222
D ++T+ +K + K K + N +LH + N K K + T T GGK+
Sbjct: 604 DLVSTARLKKKEVETKTSKRKKNWLDKLHKSTNNGSNKGGKRKKKGSKEQKTAKT-GGKK 662
Query: 221 IFKKADVHCDEP 186
K+A VH D P
Sbjct: 663 KGKEASVH-DNP 673
>06_01_0035 + 358669-359007,359458-359617,359723-360582
Length = 452
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 275 SKSYENLKHTKDTCGGKRIFKK 210
SK YEN +H D C +I KK
Sbjct: 49 SKGYENYRHQADVCHAYQIMKK 70
>02_02_0631 -
12397517-12398452,12398693-12398819,12398971-12399154,
12399303-12399395,12400029-12400077,12400565-12400624,
12400689-12400730,12400840-12400992,12401075-12401206,
12401313-12401408,12401936-12402079,12402234-12402308,
12403896-12404021
Length = 738
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 236 CGGKRIFKKADVHCDEPKLPLKRKSPRVNQRTE 138
C RI ++ DV+CD PK + +S R + TE
Sbjct: 507 CQDSRILRENDVYCDSPK-SCQSESQRSDSSTE 538
>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 356 KLKKPEFNNQFELHSDAT-SNENNSTKASKSYENLKHTKDTCGGKRIFKKADVHCDEPKL 180
K+ K F S A +++ N AS+ L H+ GG R A+ H DEP L
Sbjct: 1256 KISKSNFQEMTHTRSMAALTDDANGEGASQPRTGL-HSSGRAGGSRRAATAEQHDDEPSL 1314
>07_01_0319 + 2245724-2245753,2246797-2246976,2247547-2247630
Length = 97
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 319 NSNWLLNSGFFNLS*CFCGVDVLI 390
NS W + NL CFC V V I
Sbjct: 52 NSEWTVTKSILNLLKCFCQVQVQI 75
>02_05_0982 -
33303500-33304011,33304091-33304208,33304606-33304726,
33304811-33304877,33304968-33305102,33305186-33305297,
33305852-33306009,33306177-33306300,33306406-33306542,
33307284-33307403,33307878-33308025,33308674-33308931,
33309090-33309127,33309232-33309674,33309761-33309845,
33310063-33310123,33310277-33310453,33311611-33312408,
33314394-33314693
Length = 1303
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 341 EFNNQFELHSDATSNENNSTKASKSYENLKHTKDTCG 231
EF++ L S + ++ TKASK + + K+ +CG
Sbjct: 531 EFDDDVVLASLVHKSRSSKTKASKMHSSTKNVDGSCG 567
>01_06_1792 - 39912714-39913559
Length = 281
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = -2
Query: 428 KVNTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEN-LK 252
K TK +D + N + DK K H D + NN +K S N
Sbjct: 38 KKETKTKDYQSYTSNNNNNGSDDDKDKNKHKITSSHKHKDDEKDRNNHSKDSHGGGNSSN 97
Query: 251 HTKDTCGG 228
+ KD+ GG
Sbjct: 98 YNKDSYGG 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,623,809
Number of Sequences: 37544
Number of extensions: 171090
Number of successful extensions: 539
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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