BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0757 (549 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991,430... 29 1.8 06_03_0612 + 22735613-22735643,22735747-22735849,22737154-227375... 29 1.8 02_05_0611 + 30344637-30344652,30344743-30344883,30345258-303455... 29 1.8 11_01_0788 + 6599962-6602700 29 2.4 12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 28 4.3 06_01_0035 + 358669-359007,359458-359617,359723-360582 28 4.3 02_02_0631 - 12397517-12398452,12398693-12398819,12398971-123991... 28 5.6 02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 28 5.6 07_01_0319 + 2245724-2245753,2246797-2246976,2247547-2247630 27 9.9 02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047... 27 9.9 01_06_1792 - 39912714-39913559 27 9.9 >10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991, 4309330-4309539,4309649-4309961,4310035-4310130, 4310220-4310357,4310436-4310536,4310645-4310712, 4310800-4310849,4311790-4311848,4312399-4312530 Length = 728 Score = 29.5 bits (63), Expect = 1.8 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Frame = -2 Query: 383 TSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEN-LKHTKDTCGGKRIFKKA 207 TST K + K+ K + N + S E+ +K + E + +K +R KKA Sbjct: 485 TSTHSKGKAKVGKRQ-NTSIDERPSKKSRESGESKLTSQDEGEVGKSKSKSVNERPLKKA 543 Query: 206 DVHCDEPKLPLKR--KSPRVNQRTETKK 129 + D+ KLP + + P+ + R++ K+ Sbjct: 544 SKNRDDVKLPSQSGLEEPQTSNRSKRKR 571 >06_03_0612 + 22735613-22735643,22735747-22735849,22737154-22737511, 22737592-22738033,22738146-22738189,22738293-22738340 Length = 341 Score = 29.5 bits (63), Expect = 1.8 Identities = 16/70 (22%), Positives = 28/70 (40%) Frame = -2 Query: 437 ISPKVNTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEN 258 +SPK N K + L D + K + KKP+ + + + K+ + Sbjct: 229 VSPKGNLKPRSLNSDAAQSKEAAKKDNIQKKPDAKVRGSYNRNPAKEAITKNTGKKAKKQ 288 Query: 257 LKHTKDTCGG 228 +K K+ C G Sbjct: 289 VKGQKEDCNG 298 >02_05_0611 + 30344637-30344652,30344743-30344883,30345258-30345572, 30345907-30346053,30346446-30346543,30346719-30346805, 30346870-30347080,30347589-30347674 Length = 366 Score = 29.5 bits (63), Expect = 1.8 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = -2 Query: 395 DKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENLKHTK 243 D+IN TP+ +D+ E NN E+ E + K KS ++ K K Sbjct: 121 DRINAGTPKLKKDRRSSDEPNNADEVLHGNQDEETPTEKTKKSGKSSKKDK 171 >11_01_0788 + 6599962-6602700 Length = 912 Score = 29.1 bits (62), Expect = 2.4 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = -2 Query: 395 DKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENLKHT-KDTCGG 228 D + T H+ KLK E N+ F+L T + +K + E L H D C G Sbjct: 317 DDVATLAYPTHRLKLKPLEHNDAFDLFCKKTFYNSMHSKCPQDLEKLAHNIVDRCEG 373 >12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443, 7302885-7304042,7304133-7304291,7304397-7304504, 7305045-7305304,7305936-7306101,7307025-7307050, 7307318-7307402,7307486-7307695,7308815-7308872, 7308964-7309037,7309323-7309373,7309576-7309664, 7310027-7310104,7310164-7310269 Length = 1140 Score = 28.3 bits (60), Expect = 4.3 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Frame = -2 Query: 395 DKINTSTPQKHQ--DKLKKPEFNNQFELHSDATSNENNSTKASKSYENLKHTKDTCGGKR 222 D ++T+ +K + K K + N +LH + N K K + T T GGK+ Sbjct: 604 DLVSTARLKKKEVETKTSKRKKNWLDKLHKSTNNGSNKGGKRKKKGSKEQKTAKT-GGKK 662 Query: 221 IFKKADVHCDEP 186 K+A VH D P Sbjct: 663 KGKEASVH-DNP 673 >06_01_0035 + 358669-359007,359458-359617,359723-360582 Length = 452 Score = 28.3 bits (60), Expect = 4.3 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -2 Query: 275 SKSYENLKHTKDTCGGKRIFKK 210 SK YEN +H D C +I KK Sbjct: 49 SKGYENYRHQADVCHAYQIMKK 70 >02_02_0631 - 12397517-12398452,12398693-12398819,12398971-12399154, 12399303-12399395,12400029-12400077,12400565-12400624, 12400689-12400730,12400840-12400992,12401075-12401206, 12401313-12401408,12401936-12402079,12402234-12402308, 12403896-12404021 Length = 738 Score = 27.9 bits (59), Expect = 5.6 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 236 CGGKRIFKKADVHCDEPKLPLKRKSPRVNQRTE 138 C RI ++ DV+CD PK + +S R + TE Sbjct: 507 CQDSRILRENDVYCDSPK-SCQSESQRSDSSTE 538 >02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368, 525209-525401,525978-526330,526693-526791,526864-526935, 527062-527213,527338-527386,527755-527885,528067-528307, 528392-528565,528656-528797,529236-529282,529370-529450, 530170-530271,530345-530440,531437-531444,531575-531616, 531830-531894,534761-534853,534888-534959,535303-535509, 536318-537226,537503-538158 Length = 1429 Score = 27.9 bits (59), Expect = 5.6 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Frame = -2 Query: 356 KLKKPEFNNQFELHSDAT-SNENNSTKASKSYENLKHTKDTCGGKRIFKKADVHCDEPKL 180 K+ K F S A +++ N AS+ L H+ GG R A+ H DEP L Sbjct: 1256 KISKSNFQEMTHTRSMAALTDDANGEGASQPRTGL-HSSGRAGGSRRAATAEQHDDEPSL 1314 >07_01_0319 + 2245724-2245753,2246797-2246976,2247547-2247630 Length = 97 Score = 27.1 bits (57), Expect = 9.9 Identities = 11/24 (45%), Positives = 12/24 (50%) Frame = +1 Query: 319 NSNWLLNSGFFNLS*CFCGVDVLI 390 NS W + NL CFC V V I Sbjct: 52 NSEWTVTKSILNLLKCFCQVQVQI 75 >02_05_0982 - 33303500-33304011,33304091-33304208,33304606-33304726, 33304811-33304877,33304968-33305102,33305186-33305297, 33305852-33306009,33306177-33306300,33306406-33306542, 33307284-33307403,33307878-33308025,33308674-33308931, 33309090-33309127,33309232-33309674,33309761-33309845, 33310063-33310123,33310277-33310453,33311611-33312408, 33314394-33314693 Length = 1303 Score = 27.1 bits (57), Expect = 9.9 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -2 Query: 341 EFNNQFELHSDATSNENNSTKASKSYENLKHTKDTCG 231 EF++ L S + ++ TKASK + + K+ +CG Sbjct: 531 EFDDDVVLASLVHKSRSSKTKASKMHSSTKNVDGSCG 567 >01_06_1792 - 39912714-39913559 Length = 281 Score = 27.1 bits (57), Expect = 9.9 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Frame = -2 Query: 428 KVNTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEN-LK 252 K TK +D + N + DK K H D + NN +K S N Sbjct: 38 KKETKTKDYQSYTSNNNNNGSDDDKDKNKHKITSSHKHKDDEKDRNNHSKDSHGGGNSSN 97 Query: 251 HTKDTCGG 228 + KD+ GG Sbjct: 98 YNKDSYGG 105 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,623,809 Number of Sequences: 37544 Number of extensions: 171090 Number of successful extensions: 539 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 520 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 539 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1233951264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -