Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0757
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           37   0.012
SB_5069| Best HMM Match : Fork_head (HMM E-Value=0)                    32   0.36 
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               32   0.36 
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        30   1.1  
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)                  29   1.9  
SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)                   28   4.4  
SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)            28   4.4  
SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              27   7.6  
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         27   7.6  

>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = -2

Query: 395 DKINTSTPQKHQDKLKKPEFNNQFELHSDATSNE-NNSTKASKSYENLKHTKDTCGGKRI 219
           D  N+++ +K +  +   + +N+ + +S  TS +  N+T     YE+ +   + C  K I
Sbjct: 115 DDTNSNSEEKFEQIVNNKQ-DNERKSNSGQTSEQLTNNTVTEGRYEDSRQNSEECVNKSI 173

Query: 218 FKKADVHCDEPKLPLKRKSPRVNQRTETKKLENLKKIR 105
            K  D++ D  +  +  + P   +    +K E L   R
Sbjct: 174 SKDKDLNSDNSERSIDNRVPEERKSNSEQKSEQLTNNR 211


>SB_5069| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 331

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -2

Query: 431 PKVNTKIQDLELDKINTSTPQKHQDKLKKPEFNN 330
           P+V+   +   +D + ++TPQ +QD L KPE+++
Sbjct: 229 PQVSVARKSFAIDDLMSTTPQYNQDALHKPEYSD 262


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = -2

Query: 371  QKHQDKLKK--PEFNNQFELHSDATSNENNSTKASKSYENLKHTKDTCGGKRIFKKADVH 198
            +KH+ +L+K   +  +  E+  +   +ENN  + S+   N+K  +   G K++ +    H
Sbjct: 954  RKHERRLRKGSDKPESMEEIFEEDEMDENNGDEESEDVGNMKKEEAENGPKQVLQ----H 1009

Query: 197  CDEPKLPLKRKSPRVNQRTETKKLENLKKIRTRS 96
             +E   P +      N+R + KK + + +  T+S
Sbjct: 1010 TNELNDPNRNSRREQNKRNKAKKGKQVGQNNTKS 1043


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -2

Query: 422  NTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENLKHTK 243
            NT+ +DLE    N     + +  ++   F    ELHS+  +   N+ K  K +E ++  K
Sbjct: 936  NTRKKDLEDATANCYELTEVKRAMENKHFEQMEELHSNLNNALENAAKKDKDFEAIRKDK 995

Query: 242  DTCGGK 225
            +    K
Sbjct: 996  NQLESK 1001


>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
 Frame = -2

Query: 434 SPKVNTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYE-- 261
           SP+ N K +  +  K  +S+      K K  +   Q  L S  T ++ +S+ A+ S E  
Sbjct: 69  SPERNIKKKSSKAPKRQSSSSSSSSPKRKTKK--KQHRLKSGNTRSQTSSSSAASSPERK 126

Query: 260 --NLKHTKDTCG--GKRIFKKADVHCDEPKLPLKRKSPRVNQRTETKKLENLKKIR 105
             N  H++       KR++  ++    +     +++S +  ++ + +K + LKK++
Sbjct: 127 SGNKTHSRSRSKTKSKRLYSSSESSESDSDYKRQKRSKKKKKQMKKEKKKGLKKVK 182


>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 290 NSTKASKSYENLKHTKDTCGGKRIFKKADVHCDEPKLPLKRKS-PRVNQRTETKKLENLK 114
           N+  ASK  +   H  D  GG+      + H    + P KR+  PR +  T+TK    L 
Sbjct: 339 NAENASKYQDATNHCSDASGGRTSRDLHEQH--HVREPTKRECLPRKDPATKTKTRGTLL 396

Query: 113 KIRT 102
           ++RT
Sbjct: 397 RVRT 400


>SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)
          Length = 470

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = -2

Query: 386 NTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENLKHTKDTCGGKRIFKKA 207
           +T    ++Q K    + N Q++   DAT    NST+   + ++  H K T  GKR   ++
Sbjct: 319 STGEVNRNQPKADAAKINQQWK---DATEQPMNSTQGKVAKDDEDHAKVT-AGKRDRSQS 374

Query: 206 DVHCDEPKLPLKRK 165
           D    E   PL++K
Sbjct: 375 DSE-PEDTTPLRQK 387


>SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 872

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
 Frame = -2

Query: 416 KIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENLKHTKDT 237
           K   L LDK+N      H+DKLK    +NQ         + N+ TK  K  E   + + +
Sbjct: 51  KYHKLNLDKLNHRVKLNHRDKLKYLNKHNQ----DRRDKSNNDRTKKDKVEERPPNLQKS 106

Query: 236 CGGKRIFKKADVHCDEPKLPLKRKSPRVNQR--TETKKLENLKKIRT 102
                 F K  V        LKRK+    QR  +E  K E LK + T
Sbjct: 107 FSD---FSKPSV------AVLKRKAIDYAQRPVSEFNKYEALKMLET 144


>SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)
          Length = 600

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/69 (26%), Positives = 26/69 (37%)
 Frame = -2

Query: 434 SPKVNTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENL 255
           SP+ N   Q  E +  N     K  +  +KP    + E   D  S++   TK  K  +  
Sbjct: 13  SPEQNNSSQQTEKELANGHNMSKGDETKEKPSHRAEKEQEKDNKSSKEGETKEPKKEKAD 72

Query: 254 KHTKDTCGG 228
              KD   G
Sbjct: 73  NEHKDKESG 81


>SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)
          Length = 670

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = -2

Query: 446 GGTISPKVNTKIQDLELDKINTSTPQKH---QDKLKKPEFNN 330
           GG+   +V TK++++ L+  N +TPQ +    D++K+ +  N
Sbjct: 581 GGSCLREVTTKLENVTLNASNNTTPQSYTSNPDEVKEKKLKN 622


>SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -2

Query: 425  VNTKIQDLELD-KINTSTPQK-HQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENLK 252
            +  K+ DL+    INT + +  HQ   ++P  +NQ E++ D T  E +     +   +L+
Sbjct: 1057 IEEKLDDLQTQCHINTGSHEAIHQPPPEQPVSHNQSEVNDDETEEEADMKGYDEDIVDLQ 1116

Query: 251  HTKDTCGGKRIFKKAD 204
                   G+ I +K D
Sbjct: 1117 PQDKEEDGEVIEEKLD 1132


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 23/95 (24%), Positives = 41/95 (43%)
 Frame = -2

Query: 434  SPKVNTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENL 255
            S    T  QDLE  K+     +K ++++ K +  +  ++    T  E     A K  +  
Sbjct: 1095 SNSTKTSSQDLEKKKMKLEEDRK-RNEIAKQKLASIRKIEKILTFIETARWSAIKRAK-- 1151

Query: 254  KHTKDTCGGKRIFKKADVHCDEPKLPLKRKSPRVN 150
            +H K    G    KK D+H  E ++  +R+   +N
Sbjct: 1152 EHVKSLQKGGLEIKKRDLHESENEIEKRRRRNNIN 1186


>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/95 (23%), Positives = 41/95 (43%)
 Frame = -2

Query: 371 QKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENLKHTKDTCGGKRIFKKADVHCD 192
           +KH+DK  K   + +   HS  +S  +   +  KS    K ++D    ++  KK +   +
Sbjct: 387 KKHKDKEHKEHHHKKKRSHSKTSSTTDEEKERKKSETKNKDSEDE---EKERKKREAEEE 443

Query: 191 EPKLPLKRKSPRVNQRTETKKLENLKKIRTRSALK 87
           E +   +R+     +  E K+ E  +K R     K
Sbjct: 444 EER---RREEEERREEEERKREEEERKQREEEEKK 475


>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 434 SPKVNTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSN-ENNSTKASKSYEN 258
           S K  + I+D +LDK+N++ P   Q ++          L +    N EN S K SKS ++
Sbjct: 390 SDKGASDIEDNKLDKVNSNKPTVTQVQVHNETVPIPVSLKTRPIFNKENLSRKKSKSLDD 449

Query: 257 L 255
           +
Sbjct: 450 I 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,798,683
Number of Sequences: 59808
Number of extensions: 220430
Number of successful extensions: 1010
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)