Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0757
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    33   0.002
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.2  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 21/63 (33%), Positives = 36/63 (57%)
 Frame = -2

Query: 371 QKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENLKHTKDTCGGKRIFKKADVHCD 192
           ++H+D L     N    +HS+A++N N+ST + +S E  K T      KR  +K++ HC+
Sbjct: 729 RQHRDSLSPRVENRSAIVHSEASANANSSTSSEESREE-KATTSLEAEKR--EKSE-HCE 784

Query: 191 EPK 183
           + K
Sbjct: 785 KGK 787


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 313 LCNSNWLLNSGFFNLS*CFCGVDVLILSNSKS*IL 417
           +C+  W+L+SG  N     C   +L+   + S +L
Sbjct: 129 MCDRLWVLDSGLINNVRSVCPPQLLVFDLNTSQLL 163


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 188 PKLPLKRKSPRVNQRTETK-KLENLKK 111
           PK+P K+K   +++  E+K KL   +K
Sbjct: 208 PKVPEKKKEDEIDEGKESKTKLSQWRK 234


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 182 LPLKRKSPRVNQRTETKKLENLKKIRTRS 96
           L L R    V+Q  E   L+NL+K RTR+
Sbjct: 220 LRLSRLVRYVSQWEEVYILQNLQKKRTRA 248


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 418 VFTFGLIVPPSLFIFY 465
           +FTF   +P  L I+Y
Sbjct: 215 IFTFSYCIPMILIIYY 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,339
Number of Sequences: 438
Number of extensions: 2379
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)