Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0757
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ...    36   0.013
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ...    33   0.13 
At1g63300.1 68414.m07156 expressed protein similar to Intracellu...    31   0.38 
At1g03920.1 68414.m00377 protein kinase, putative contains prote...    30   1.2  
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet...    29   1.5  
At3g28770.1 68416.m03591 expressed protein                             29   1.5  
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    29   2.0  
At5g24100.1 68418.m02830 leucine-rich repeat transmembrane prote...    29   2.7  
At4g25210.1 68417.m03628 expressed protein weak similarity to st...    28   4.7  
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea...    28   4.7  
At2g38040.2 68415.m04670 acetyl co-enzyme A carboxylase carboxyl...    28   4.7  
At2g38040.1 68415.m04669 acetyl co-enzyme A carboxylase carboxyl...    28   4.7  
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ...    27   8.3  
At3g48080.1 68416.m05242 lipase class 3 family protein / disease...    27   8.3  
At2g02955.1 68415.m00243 expressed protein ; expression supporte...    27   8.3  

>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 439

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
 Frame = -2

Query: 434 SPKVNTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYE-- 261
           S  +N ++Q L L        +  Q K+K+P  ++    H+  T+N N S   S SY+  
Sbjct: 262 SNNLNLELQLLPLSSNQNPNQENQQQKVKEPSHHHN---HNHDTTNLNLSIAPSSSYQHY 318

Query: 260 -NLKHTKDTCGGKRIFK---KADVHCDEPKLPLKRKSPRVNQRTETKKLENLKKIRTRS 96
            N    K+    ++I K   K   + +E K   KR+     +     +  N KKIR ++
Sbjct: 319 NNFDRIKEIMASEQIMKIAMKEKAYAEEAKREAKRQ-----REIAENEFANAKKIRQKA 372


>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
           SP|P46087 Proliferating-cell nucleolar antigen p120
           (Proliferation-associated nucleolar protein p120) {Homo
           sapiens}, SP|P40991 Nucleolar protein NOP2
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 682

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -2

Query: 281 KASKSYENLKHTKDTCGGKRIFKKADVHCDEPKLPLKRKSPRVNQRTETKKLENLKKIRT 102
           K  K+ E L  +K+   GK+  K    + +EP  P K+K  R   + E  +    K+I  
Sbjct: 615 KEKKNKEKLAKSKEDKRGKKDKKSKSENVEEPSKPRKQKKKRREWKNEIAQAREEKRIAM 674

Query: 101 RSALK 87
           R   K
Sbjct: 675 REKAK 679


>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]; similar to Myosin II heavy
           chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
           discoideum]
          Length = 1029

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = -2

Query: 350 KKPEFNNQFELHSDATSNENNSTKASK-SYENLKHTKDTCGGKRIFKKADVHCDEPKLPL 174
           K  E +NQ     D T+N N   K  K   ENLK  +D+     +  +A+   +  ++ L
Sbjct: 708 KSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDS-----LMLQAE-QAENLRVDL 761

Query: 173 KRKSPRVNQRTETKKLENLKKIRTRSAL 90
           ++    V +   + + EN+KKI   S +
Sbjct: 762 EKTKKSVMEAEASLQRENMKKIELESKI 789


>At1g03920.1 68414.m00377 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 569

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 371 QKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEN 258
           +K + K K+P   + FE  SD++S+ +     ++SY N
Sbjct: 516 KKKESKSKRPSVKSLFESESDSSSSGSEQQTINRSYSN 553


>At5g27650.1 68418.m03313 PWWP domain-containing protein
           hypothetical protein F22F7.12 - Arabidopsis thaliana,
           EMBL:AC009606
          Length = 1072

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
 Frame = -2

Query: 431 PKVNTKIQDLELDKINT------STPQKHQDKLKKPEFNNQFELHS-DATSNENNSTKAS 273
           P++ + +QDL LD  +        T +K   + +   +     + S DAT      TK S
Sbjct: 640 PQLLSHLQDLSLDPFHGLSVASFGTARKFFLRFRSLNYQKSLSVSSSDATVENARDTKPS 699

Query: 272 KSYENLKHTKD--TCGGKRIFKKADVHCDEPKLPLKRKSPRVNQRTETKKL 126
           K  + +K T+D    G KR+   +D   + P     +K+ ++      KK+
Sbjct: 700 KPVKTVKRTEDPSKAGKKRL--SSDRQDEIPSAKKLKKTNQLKSMASEKKI 748


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
 Frame = -2

Query: 395  DKINTSTPQKHQDK-----------LKKPEFNNQFELHSDATSNENNSTKASKSYENLK- 252
            D INTS+ QK +DK           +KK E + +  ++++    E+N  + +KS EN K 
Sbjct: 931  DTINTSSKQKGKDKKKKKKESKNSNMKKKEEDKKEYVNNELKKQEDNKKETTKS-ENSKL 989

Query: 251  --HTKDTCGGKRIFKKADVHCDEPKLPLKRKSPRVNQRTETKKLENLKK 111
                KD    K     A  + ++ +   K+   +   + E KK ++ K+
Sbjct: 990  KEENKDNKEKKESEDSASKNREKKEYEEKKSKTKEEAKKEKKKSQDKKR 1038


>At4g20160.1 68417.m02949 expressed protein ; expression supported by
            MPSS
          Length = 1188

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 10/121 (8%)
 Frame = -2

Query: 437  ISPKVNTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYEN 258
            ++  +  KI +L + ++ +          +  E+  ++E+   A + E+N T+      N
Sbjct: 982  LTSDLRQKIDNLMITRVQSHIGVPLNQIEEGDEYEEEWEVECSARNEEDNETEEEPEKTN 1041

Query: 257  LKHTKDTCGGKRI---------FKKADVHCD-EPKLPLKRKSPRVNQRTETKKLENLKKI 108
            L+   D C              F+  D+  D EP   L    P V     T+ ++ +  +
Sbjct: 1042 LEAPSDVCSQSSARSSTMMSWNFRDQDIDKDNEPTTSLSLPEPLVPTNQSTQDMQTISDL 1101

Query: 107  R 105
            +
Sbjct: 1102 K 1102


>At5g24100.1 68418.m02830 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 614

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 546 RQKNXTNQTRDKIEVGIKIEADMEDFQVKNEKTWRDYKSKSEYQDSRFRIGQN 388
           ++K+ T    DK+++  K+ ++ E  ++  EK   D + KSE     F  G N
Sbjct: 279 QRKSETEPKPDKLKLAKKMPSEKEVSKLGKEKNIEDMEDKSEINKVMFFEGSN 331


>At4g25210.1 68417.m03628 expressed protein weak similarity to
           storekeeper protein [Solanum tuberosum] GI:14268476;
           contains Pfam profile PF04504: Protein of unknown
           function, DUF573
          Length = 368

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 452 RLGGTISPKVNTKIQDLELDKINTSTPQKHQDKLKKPE 339
           ++GGT +PK        E+  +  STP+K Q++ KKPE
Sbjct: 252 KVGGTPAPK--------EMKLVAHSTPKKQQEEAKKPE 281


>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
           family protein contains seven WD-40 G-protein beta
           repeats; similar to RA-regulated nuclear
           matrix-associated protein (GI:14161320) {Homo sapiens}
          Length = 535

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -2

Query: 422 NTKIQD-LELDKINTSTPQKHQDKLKKPEFNNQFELHSDAT-SNENNSTKASKSYENLKH 249
           NT+ ++ LE+++  T +PQKH       ++NN   +    T  ++   T +S S  +L  
Sbjct: 437 NTEAKERLEMNR-ETESPQKHSSLSSDDDYNNDQSMPIIRTPESQKKKTSSSSSLSSLSS 495

Query: 248 TKD 240
            +D
Sbjct: 496 EED 498


>At2g38040.2 68415.m04670 acetyl co-enzyme A carboxylase
           carboxyltransferase alpha subunit family contains Pfam
           profile: PF03255: Acetyl co-enzyme A carboxylase
           carboxyltransferase alpha subunit
          Length = 769

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = -2

Query: 422 NTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENLK 252
           N  +Q+ +L+K+N     K ++ ++ PE  +  EL    T+  + +   +++Y+ ++
Sbjct: 645 NENLQE-KLEKLNQEITSKIEEVVRTPEIKSMVELLKVETAKASKTPGVTEAYQKIE 700


>At2g38040.1 68415.m04669 acetyl co-enzyme A carboxylase
           carboxyltransferase alpha subunit family contains Pfam
           profile: PF03255: Acetyl co-enzyme A carboxylase
           carboxyltransferase alpha subunit
          Length = 769

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = -2

Query: 422 NTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENLK 252
           N  +Q+ +L+K+N     K ++ ++ PE  +  EL    T+  + +   +++Y+ ++
Sbjct: 645 NENLQE-KLEKLNQEITSKIEEVVRTPEIKSMVELLKVETAKASKTPGVTEAYQKIE 700


>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 501

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 21/105 (20%), Positives = 41/105 (39%)
 Frame = -2

Query: 410 QDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKSYENLKHTKDTCG 231
           ++L + ++   TP K +    +     Q  L  D       + KA+ SY+ ++ +K    
Sbjct: 355 RELRISRVKPDTPSKRKSNPSEAYSPAQKRLQKDKVVTPTPTGKANLSYQGVRASKSGDD 414

Query: 230 GKRIFKKADVHCDEPKLPLKRKSPRVNQRTETKKLENLKKIRTRS 96
            K  ++K+            +  PR +   + KK  N    + RS
Sbjct: 415 KKTPYQKSSAQ--------TKMRPRGSSSNDNKKSGNNSASKERS 451


>At3g48080.1 68416.m05242 lipase class 3 family protein / disease
           resistance protein-related similar to disease resistance
           protein/lipase homolog EDS1 GI:4454567; contains Pfam
           profile PF01764: Lipase
          Length = 629

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 157 LGDFLFKGNLGSSQWTSAFLNIL 225
           +GD++FK  LG   W+  F+N +
Sbjct: 161 VGDYIFKHALGRENWSRFFVNFV 183


>At2g02955.1 68415.m00243 expressed protein ; expression supported
           by MPSS
          Length = 666

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = -2

Query: 446 GGTISPKVNTKIQDLELDKINTSTPQKHQDKLKKPEFNNQFELHSDATSNENNSTKASKS 267
           GGT     N K +  E   I  S P+   D  +  +F +QFE  +          +A  S
Sbjct: 46  GGTQGALYNPKHRRTEPQPITPSQPRFTDDTSRYSQFKSQFESENGNKELPREVKRAPDS 105

Query: 266 YENLKHTK 243
           Y + + T+
Sbjct: 106 YVDKEPTE 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,330,357
Number of Sequences: 28952
Number of extensions: 161553
Number of successful extensions: 601
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)