Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0756
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.5  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   7.3  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    21   9.6  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
 Frame = +1

Query: 130 LSSHTSSPSILDIPLRSQTSTCIHHIMRSIKHHS----HIRPSCT*VCPQSYLFITLTSY 297
           L S   +P I++    S  +  + +     KH +     I      + P+SY   T    
Sbjct: 9   LKSRQKAPKIVNSKYNSILNIALKNFRLCKKHKTKKPVQILALLQEIIPKSYFGTTTNLK 68

Query: 298 NIEKVIQKVINHS 336
              KV++K++  S
Sbjct: 69  RFYKVVEKILTQS 81


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 277 FITLTSYNIEKVIQKVINHS 336
           FI +T+Y  EK+ +  IN++
Sbjct: 175 FIAVTAYQNEKITKLKINYN 194


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 680 KVKRKNRSNVEKADAQVEGPNKTTTSAD 597
           K  +K R  VEKA   +   +KTT + +
Sbjct: 85  KALQKLRREVEKAKRDLSSVHKTTLTIE 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,887
Number of Sequences: 336
Number of extensions: 2392
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)