Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0756
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0389 - 8456957-8459917,8461941-8462267                           31   0.87 
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123...    28   6.2  

>09_02_0389 - 8456957-8459917,8461941-8462267
          Length = 1095

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +1

Query: 82  FRRARASFVVVHPSVI--LSSHTSSPSILDIPLRSQTSTCIHHIMRSIKHHSHIR 240
           FR  R +FV  +PS    L+   +  S++++     T TCI +I +S++H  H+R
Sbjct: 524 FRSFRTAFVYKNPSGDRGLNWLINLRSLINLRSLDLTGTCIRYIPKSLEHLHHLR 578


>01_06_0847 +
           32411521-32411619,32411737-32411851,32412292-32412375,
           32412430-32413478,32414690-32416371,32416477-32416586,
           32417634-32418430,32418839-32418951,32419147-32419194,
           32419425-32419652,32419732-32419829,32419967-32420019
          Length = 1491

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +3

Query: 180 TNINLHPSYHAFNKTSFPHSAVLHVSLSSELPFYNTNILQHRESY 314
           T +  HP  H F +   PH++  +  L S +  +++++ +   SY
Sbjct: 448 TELKRHPEIHNFEQNLLPHNSAPYFGLPSGIVPFSSSVPRDYTSY 492


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,737,100
Number of Sequences: 37544
Number of extensions: 216566
Number of successful extensions: 420
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)