Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0756
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023847-4|CAA19550.1| 349|Caenorhabditis elegans Hypothetical ... 30 1.8
AL117199-2|CAB55041.1| 189|Caenorhabditis elegans Hypothetical ... 29 2.4
AL117199-1|CAB55038.1| 189|Caenorhabditis elegans Hypothetical ... 29 2.4
U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain (pr... 29 3.2
U23448-7|AAM81128.1| 868|Caenorhabditis elegans Dnaj domain (pr... 29 3.2
U23448-6|AAL27225.1| 915|Caenorhabditis elegans Dnaj domain (pr... 29 3.2
U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain (pr... 29 3.2
U80839-11|AAB37912.2| 261|Caenorhabditis elegans Hypothetical p... 28 7.3
AF024501-8|AAN65318.1| 550|Caenorhabditis elegans Hypothetical ... 28 7.3
Z74476-2|CAA98962.1| 200|Caenorhabditis elegans Hypothetical pr... 27 9.7
>AL023847-4|CAA19550.1| 349|Caenorhabditis elegans Hypothetical
protein Y57A10C.8 protein.
Length = 349
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -1
Query: 470 LLAY-DVLISFYHKMSFVFFLS*FCCNMFSL*SYDVNVIVVNCFV 339
LL Y D+L + M+ V+ ++ CC + ++ S+ +N ++ CF+
Sbjct: 15 LLQYSDILHLLFVCMAMVYLVTDVCCLVAAVLSFCINFFIITCFL 59
>AL117199-2|CAB55041.1| 189|Caenorhabditis elegans Hypothetical
protein Y43F11A.4 protein.
Length = 189
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 668 KNRSNVEKADAQVEGPNKTTTSADFMKKWPDYLS 567
++ SN KA A P K TSA+++KK+ +YL+
Sbjct: 8 RSNSNAIKARAPASAP-KRPTSAEYVKKYTEYLA 40
>AL117199-1|CAB55038.1| 189|Caenorhabditis elegans Hypothetical
protein Y43F11A.1 protein.
Length = 189
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 668 KNRSNVEKADAQVEGPNKTTTSADFMKKWPDYLS 567
++ SN KA A P K TSA+++KK+ +YL+
Sbjct: 8 RSNSNAIKARAPASAP-KRPTSAEYVKKYTEYLA 40
>U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform b
protein.
Length = 849
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 121 SVILSSHTSSPSILDIPLR--SQTSTCIHHIMRSIKHHSH 234
S+ L++ +SSP++ P R S+ +HH ++ HH+H
Sbjct: 116 SLNLAAGSSSPALPSTPSRVPHHPSSQVHHFHHNLHHHTH 155
>U23448-7|AAM81128.1| 868|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform d
protein.
Length = 868
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 121 SVILSSHTSSPSILDIPLR--SQTSTCIHHIMRSIKHHSH 234
S+ L++ +SSP++ P R S+ +HH ++ HH+H
Sbjct: 116 SLNLAAGSSSPALPSTPSRVPHHPSSQVHHFHHNLHHHTH 155
>U23448-6|AAL27225.1| 915|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform a
protein.
Length = 915
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 121 SVILSSHTSSPSILDIPLR--SQTSTCIHHIMRSIKHHSH 234
S+ L++ +SSP++ P R S+ +HH ++ HH+H
Sbjct: 116 SLNLAAGSSSPALPSTPSRVPHHPSSQVHHFHHNLHHHTH 155
>U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform c
protein.
Length = 912
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 121 SVILSSHTSSPSILDIPLR--SQTSTCIHHIMRSIKHHSH 234
S+ L++ +SSP++ P R S+ +HH ++ HH+H
Sbjct: 116 SLNLAAGSSSPALPSTPSRVPHHPSSQVHHFHHNLHHHTH 155
>U80839-11|AAB37912.2| 261|Caenorhabditis elegans Hypothetical
protein ZC204.3 protein.
Length = 261
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/72 (18%), Positives = 31/72 (43%)
Frame = +1
Query: 112 VHPSVILSSHTSSPSILDIPLRSQTSTCIHHIMRSIKHHSHIRPSCT*VCPQSYLFITLT 291
++P VI + ++ IL++ +R + + + + HHS + + Y L+
Sbjct: 161 IYPKVIFPNDFTAEKILELAVRFKVPAAVALVENQLLHHSTLSHGKLLLLADKYEMHRLS 220
Query: 292 SYNIEKVIQKVI 327
+ K+ K +
Sbjct: 221 GQQVRKIYTKEV 232
>AF024501-8|AAN65318.1| 550|Caenorhabditis elegans Hypothetical
protein F39E9.12 protein.
Length = 550
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/67 (20%), Positives = 28/67 (41%)
Frame = +1
Query: 112 VHPSVILSSHTSSPSILDIPLRSQTSTCIHHIMRSIKHHSHIRPSCT*VCPQSYLFITLT 291
+HP+ + + S IL + R + + I H+ + H+S + C Y L
Sbjct: 198 IHPNPVFPNDRSVEKILVLADRFKVQSAIDHVEHHLLHNSRLANECMMWMADKYGMKKLL 257
Query: 292 SYNIEKV 312
+I+ +
Sbjct: 258 KISIQNI 264
>Z74476-2|CAA98962.1| 200|Caenorhabditis elegans Hypothetical
protein W05B10.2 protein.
Length = 200
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 201 SYHAFNKTSFPHSAVLHVSLSSELPFYNTNILQHRESYTKSYKS 332
S+ N++S AV VS+SSE FY T + + ++K +KS
Sbjct: 156 SHPVHNRSS---DAVNEVSISSEAKFYTTETPEAQVFHSKKFKS 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,852,165
Number of Sequences: 27780
Number of extensions: 218404
Number of successful extensions: 516
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -