Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0756
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35380.1 68418.m04205 protein kinase family protein contains ...    29   3.9  
At1g10700.1 68414.m01217 ribose-phosphate pyrophosphokinase 3 / ...    28   6.8  
At4g05303.1 68417.m00805 hypothetical protein                          27   9.0  

>At5g35380.1 68418.m04205 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 731

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 172 LRSQTSTCIHHIMRSIKHHSHIRPS 246
           LRS TS+  H  M S++HHSH + S
Sbjct: 153 LRSATSSPPHSNMPSMRHHSHAQTS 177


>At1g10700.1 68414.m01217 ribose-phosphate pyrophosphokinase 3 /
           phosphoribosyl diphosphate synthetase 3 (PRS3) nearly
           identical to phosphoribosyl diphosphate synthase
           GI:4902470 from [Arabidopsis thaliana]
          Length = 411

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 136 SHTSSPSILDIPLRSQTSTCIHHIMRSIKHHS 231
           S +SSPS L+    S ++ CI   +RS+++HS
Sbjct: 28  SSSSSPSFLNFKTASVSNRCIKCGVRSLENHS 59


>At4g05303.1 68417.m00805 hypothetical protein
          Length = 235

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 169 VYREWKGMTCEMTE*QMDERRRTKHEHD 86
           V  EWK +T  +     D  R TKHE+D
Sbjct: 67  VENEWKTITSFLVRKSTDSVRATKHEYD 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,825,690
Number of Sequences: 28952
Number of extensions: 191190
Number of successful extensions: 469
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)