Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0755
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   4.4  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   4.4  
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    25   7.7  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 66  YHHPAYFYREAVTRFGLKGGAAVVTILETLELMSQGG 176
           +  P+ F  E V    L GG AVV +  TLE + Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 222 NTRWAVSSSNHLKKKIYSSHVIIMFVLEIIVTIDFTVSGFFIF 350
           +T+  +S+S H   ++ SS       LE+ V ID   SG+F +
Sbjct: 259 STQPLLSNSRHSSFRLASSSTSFPASLEMNVDIDLEPSGYFFY 301


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 614 WTAWYRLPPSASLARSDRLAGVL 546
           WT W+  PP+  L  SD L  ++
Sbjct: 70  WTLWFLKPPTQGLEWSDLLKEII 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,981
Number of Sequences: 5004
Number of extensions: 53272
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)