Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0755
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0603 - 26046145-26046273,26046400-26046459,26046820-260468...    32   0.37 
08_02_1461 - 27299891-27301870                                         31   1.1  
05_07_0073 - 27504169-27504882,27504989-27505161,27505302-275054...    29   3.4  
05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    28   6.0  
01_06_1749 - 39636951-39638102                                         28   6.0  
10_07_0186 - 13912973-13913015,13913467-13913773,13913983-139140...    28   7.9  

>03_05_0603 -
           26046145-26046273,26046400-26046459,26046820-26046895,
           26046988-26047109,26047286-26047360,26047466-26047536,
           26048102-26048129,26048625-26048738
          Length = 224

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +3

Query: 129 AVVTILETLELMSQGGWRIYVVDVYELQ*P-LNTRWAVSSSNHLKKKIYSSHVIIMFVLE 305
           ++V I  T+ L  +G +  Y+V + E   P +N RW + ++   K   Y  + I+MFV  
Sbjct: 103 SLVAIAYTM-LSGEGQFYTYMVLISETTTPEINLRWFLDTAGLKKSSAYLVNGILMFVAW 161

Query: 306 IIVTIDFTVSGFF-IFIAHAKLM 371
           ++  I   +  F+ I++ ++++M
Sbjct: 162 LVARILLFIYVFYHIYLHYSQVM 184


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 123 HPSNRNALLLHGRNRQGGGTHPRGLTRAPTTS 28
           H ++    LL GR R GGG H RGL   P  S
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVS 313


>05_07_0073 -
           27504169-27504882,27504989-27505161,27505302-27505485,
           27505604-27505675,27506173-27506733,27506846-27507145
          Length = 667

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 337 PDTVKSIVTMISKTNIIMTWELYIFFFRWLDELTAHLV 224
           P  V    T ++  + ++TW L  F FR++D+   H++
Sbjct: 192 PAFVAFAATPVATDSSVLTWSLPNFLFRFIDKYGTHVI 229


>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 131 RCNYT*DLRTYVSRWVAHLRCGCL 202
           RC  T  LR    RW  HL+C CL
Sbjct: 301 RCTGTTVLRNKAPRWHEHLQCWCL 324


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 148 SSIVTTAAPPFKPKRVTA 95
           SS+ + AAPPF P R+T+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>10_07_0186 -
           13912973-13913015,13913467-13913773,13913983-13914043,
           13914124-13914299,13914393-13914450,13914709-13914776,
           13915591-13915666,13916523-13916627,13916711-13916768,
           13916874-13917031
          Length = 369

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/95 (24%), Positives = 38/95 (40%)
 Frame = +3

Query: 39  ELL*VRAGGYHHPAYFYREAVTRFGLKGGAAVVTILETLELMSQGGWRIYVVDVYELQ*P 218
           ++L  + G  + P Y Y        L GG  + T+L  L  + +GG  I+     +L  P
Sbjct: 181 QILHYQNGEKYEPHYDYFHDKNNQAL-GGHRIATVLMYLSDVGKGGETIFPEAEGKLLQP 239

Query: 219 LNTRWAVSSSNHLKKKIYSSHVIIMFVLEIIVTID 323
            +  W+  + N    K      ++ F L    T D
Sbjct: 240 KDDTWSDCAKNGYAVKPVKGDALLFFSLHPDATTD 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,341,137
Number of Sequences: 37544
Number of extensions: 399551
Number of successful extensions: 1079
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)