Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0755
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)         32   0.37 
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               29   2.6  
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_23605| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_51270| Best HMM Match : DUF6 (HMM E-Value=6.8)                      29   4.6  
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)                29   4.6  
SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)                    28   6.1  
SB_15221| Best HMM Match : ASC (HMM E-Value=0.0016)                    28   6.1  

>SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
          Length = 666

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 439 VKQCVMSFFGHIMRSPRHELEKLIITGRIEGKRAVGR--TPARRSDLAR-EALGGSLYHA 609
           +K+C + + GH++R  +  + K        GKR +GR  T  RR+  A    +G +   A
Sbjct: 581 IKRCRLKWLGHVLRMGQERIPKTSALWTSIGKRKLGRPKTTWRRTIQAELLEMGLTWGKA 640

Query: 610 VHATHDRAHWKY 645
           +    DR  W++
Sbjct: 641 LKVAKDRQEWRH 652


>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +1

Query: 454 MSFFGHIMRSPRHELEKLIITGRIEGKRAVGR--TPARRSDLAREALGG---SLYHAVHA 618
           M + GH++R  +  + K+ +     G+R  GR  T  RR+ L+   L G   +L  A H 
Sbjct: 47  MRWLGHVLRMDQRRIPKVALRWTPPGRRKPGRPKTTWRRTILSE--LSGHQLTLAEAQHM 104

Query: 619 THDRAHWK 642
             DR  WK
Sbjct: 105 ARDRRKWK 112


>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +1

Query: 424 SLM*VVKQCVMSFFGHIMRSPRHELEKLIITGRIEGKRAVGR--TPARRSDLAR-EALGG 594
           SL+  ++   + + GH++R  +  + K+ +     G+R  GR  T  RR+  ++ + LG 
Sbjct: 37  SLVNQIRYRRLKWLGHVLRMDQQRIPKIDLHWTPAGRRKPGRPKTTLRRTIASKLKDLGL 96

Query: 595 SLYHAVHATHDRAHWK 642
           S  HA +   +R  W+
Sbjct: 97  SWGHAQYLARNRREWR 112


>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/51 (25%), Positives = 31/51 (60%)
 Frame = +3

Query: 282 VIIMFVLEIIVTIDFTVSGFFIFIAHAKLMYVSVTVLS*RELILMYVVIDV 434
           VII+ ++ II+TI  T++   I I    ++ + + ++    +I++ ++ID+
Sbjct: 661 VIIIIIITIIITITITITIIIIIIITTIIIIIIIIIII--SIIIIIIIIDI 709


>SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 469  HIMRSPRHELEKLIITGRIEGKRAVGRTPARR--SDLAREALGGSLYHAVHATHDRAHWK 642
            ++ R+ + ++EKL +T   + + +  +    +  S   R A  G   H  H THD A   
Sbjct: 850  NLSRNQKRDIEKLELTQNADLRTSSRKMRQDQVWSRATRHAKRGKTTHVQHVTHDEARPG 909

Query: 643  YIACGR 660
             + C R
Sbjct: 910  MVTCNR 915


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 156 LRSQV*LQRLPHPSNRNALLLHGRNRQ 76
           LR Q  +QR P P+ RN++ LHG   Q
Sbjct: 24  LRQQNQVQRRPEPTPRNSIFLHGLRAQ 50


>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 84  FYREAVTRFGLKGGAAVVTILETLELMSQG 173
           FY  A   FG  G  AV  ++ TL LM QG
Sbjct: 692 FYETAKYPFGFFGSTAVCKLIPTLSLMCQG 721


>SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 555 WCSAHGALAFYSTRNYELL*FMSGRP 478
           WC AHGA+  ++   ++L+    GRP
Sbjct: 408 WCVAHGAIRSFNKLTWKLIRLKGGRP 433


>SB_23605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 555 WCSAHGALAFYSTRNYELL*FMSGRP 478
           WC AHGA+  ++   ++L+    GRP
Sbjct: 21  WCVAHGAIRSFNKLTWKLIRLKGGRP 46


>SB_51270| Best HMM Match : DUF6 (HMM E-Value=6.8)
          Length = 301

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +3

Query: 219 LNTRWAVSSSNHLKKKIYSSHVIIMFVLEIIVTIDFTVSGFFIFIAHAKLMYVSVTVLS* 398
           +N  + +    HL     S HVII+ ++ II+ I   +    I I    ++ V V V+  
Sbjct: 27  VNMAFNIIKLRHLNIFFVSVHVIIIIIIIIIIIIIIIIIIIIIIIIIIIIVVVVVVVVVV 86

Query: 399 RELILMYVVIDVS 437
             ++++ VVI ++
Sbjct: 87  VVVVVVVVVIAIA 99


>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 501 EAHNYGSNRRQARRGQNTSQTVRSSKRSTR 590
           E H+YG+NR+Q R  Q++S T  S +   R
Sbjct: 27  EKHDYGNNRKQ-RNAQSSSSTETSQRSRAR 55


>SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)
          Length = 323

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 225 TRWAVSSSNHLKKKIYSSHVIIMFVLEIIVTIDFTVSGFF-IFIAHAK 365
           T +A+ + +HL +   SSH +I +V  + + + F+VS FF +   H K
Sbjct: 34  TIFALHALHHLAQDKSSSHKVIAWVYGVSLILIFSVSTFFHVACMHGK 81


>SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1514

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 300  LEIIVTIDFTVSGFFIFIAHAKLMYVSVTVLS*RELILMYVVIDVSSQAMCYELLRTHH 476
            L +I+ +    +GF      AKL +V +T      L+LM +V  + + +  Y  LRTH+
Sbjct: 1449 LVVILWVLAVFTGFLQLWVEAKLFFVMITA-----LMLMCLVTMILAYSKAYIALRTHY 1502


>SB_15221| Best HMM Match : ASC (HMM E-Value=0.0016)
          Length = 490

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/57 (24%), Positives = 35/57 (61%)
 Frame = +3

Query: 264 KIYSSHVIIMFVLEIIVTIDFTVSGFFIFIAHAKLMYVSVTVLS*RELILMYVVIDV 434
           K Y +H+II+ ++ I++TI  T++   I IA   ++ + + ++    +I++ ++I +
Sbjct: 143 KNYRTHIIIILIIIILITI-ITITAIAIAIAIIIIIIIIIIIII---IIIITIIITI 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,537,176
Number of Sequences: 59808
Number of extensions: 436400
Number of successful extensions: 1067
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)