Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0755
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF016687-4|AAC48097.1|  183|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical
           protein F13B12.3 protein.
          Length = 717

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 352 IKIKNPDTV-KSIVTMISKTNIIMTWELYIFFFRWLDELTAHLVLRGYWSS 203
           +KI N D    SIV MI K   IM   +++F   W      H+ L G+  S
Sbjct: 423 MKIANVDAFFGSIVLMIKKMIPIMVKFMFVFMVFWFTYAVCHISLAGHLKS 473


>AF016687-4|AAC48097.1|  183|Caenorhabditis elegans Hypothetical
           protein T21D12.12 protein.
          Length = 183

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 609 CMVQTTTECFSC*I*PSGWCSAHGALAFYSTRN 511
           C  Q  T+CFS     +  C   GA +FY  +N
Sbjct: 15  CFAQQQTDCFSARDTGNSGCGQQGARSFYFHKN 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,601,549
Number of Sequences: 27780
Number of extensions: 318568
Number of successful extensions: 780
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)