Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0755
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.51 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 551 VLPTARLPSIRPVIMSFSNSCLGDRMMCPKKLITHCLTT 435
           VL     P +    ++FS SCL + ++CP   +T   TT
Sbjct: 416 VLTIEEKPFVYVREIAFSESCLPEEILCPHFNVTDGETT 454


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 561 SGWCSAHGALAFYSTRNYELL*FMSGRPHDVSEEAHNTLLDYL 433
           +GW    G   FY  + Y+    ++ R  DV EE  N +  +L
Sbjct: 178 TGWTFHEGRKQFYFHQFYKQQPDLNYRNSDVREEMKNIMKFWL 220


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 625 HGWHGLHG 602
           HG HGLHG
Sbjct: 135 HGLHGLHG 142



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 625 HGWHGLHG 602
           HG HGLHG
Sbjct: 138 HGLHGLHG 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,747
Number of Sequences: 438
Number of extensions: 3938
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)