Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0754
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    26   3.3  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   3.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   5.8  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    25   7.7  

>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 48  SEHELHNPVDEVNSALCVGGGADEGRSVLEQKGWREGEH 164
           ++HE  N ++  N ALC+G    +  ++ E    ++ E+
Sbjct: 296 TQHEQENMMNAQNLALCIGPSFSKADNIAELMSMKDKEY 334


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 217 PCMLSPSWHSRVGSTRW*CSPSRQPFCSSTERPSSAPP-PTHNAELTSSTGLWSSCSLLN 41
           P  +SPS+ +   ST    +PS+ P  S +  P  AP  P  +     S  L S C L +
Sbjct: 210 PVSISPSFIASAASTSSVSAPSQYPGLSRSP-PVQAPNIPVSDPWAIPSQDLTSFCQLFS 268

Query: 40  TVN 32
            V+
Sbjct: 269 NVD 271


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 154 SRQPFCSSTERPSS-APPPTHNAELTSST 71
           S+ P  +++ RPSS APP  H   +TS +
Sbjct: 207 SQAPVANTSSRPSSFAPPAGHAPNVTSES 235


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 127 ERPSSAPPPTHNAELTSSTGLWSSCSLLNTVNAMSCLR 14
           ERPSS   P  + E TSS    S+ S    V  +  LR
Sbjct: 225 ERPSSLSKPKKDGEETSSVNKPSASSTQTDVKGVEGLR 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,514,598
Number of Sequences: 5004
Number of extensions: 25332
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)