Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0754
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 1.9
06_01_1013 - 7931756-7935109 29 2.6
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 29 2.6
12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004 29 3.4
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 28 4.5
11_02_0041 - 7669692-7670312 28 5.9
03_04_0174 - 18044516-18046327 28 5.9
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 27 7.8
06_03_0601 - 22650370-22650623,22650786-22650792 27 7.8
02_04_0242 + 21210062-21210541 27 7.8
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -3
Query: 475 GGPPASEEWGARGGGGSHHRDGQELPVDLPLRHENPLAPDCRLDMD 338
GG G RGGGGS + Q+ P DLP E LA ++D
Sbjct: 190 GGRGGGGRRGGRGGGGSSYH--QQPPPDLPQAPEPRLAAQYAREID 233
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 139 CSSTERPSSAPPPTHNAELTSSTGLWSSCSLLNTVNAMSCLRT 11
C+ + PS PP N + +SSTG +SC + C T
Sbjct: 655 CNRSCHPSPCDPPPANGDASSSTGGRASCGQVCGAPRRECKHT 697
>01_06_1112 +
34606171-34606266,34607170-34607231,34607932-34608019,
34608104-34608165,34608246-34608342,34608499-34608930,
34609042-34610061,34610151-34610282,34610354-34610470,
34610982-34611062,34611321-34611447,34611547-34611592,
34611663-34611708
Length = 801
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 160 SPSRQPFCSSTERPSSAPPPTHNAELTSS 74
+P+ +P S+ R S APP H+A+L +S
Sbjct: 308 APTEKPVNSAVNRQSVAPPMAHSAQLYAS 336
>12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004
Length = 266
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 136 SSTERPSSAPPPTHNAE 86
SS+ +PSS PPP H AE
Sbjct: 179 SSSSQPSSPPPPPHEAE 195
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 475 GGPPASEEWGARGGGGSHHRDG 410
GGPP E+ RGG GSHH G
Sbjct: 157 GGPP---EYQGRGGPGSHHPGG 175
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 475 GGPPASEEWGARGGGGSHHRDG 410
GGPP ++ RGG GSHH G
Sbjct: 175 GGPP---DYQGRGGSGSHHPGG 193
>11_02_0041 - 7669692-7670312
Length = 206
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 72 VDEVNSALCVGGGADEGRSVLEQKGWREGEHYHRVE 179
VDE + L V G + E++G R+G +HR E
Sbjct: 101 VDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAE 136
>03_04_0174 - 18044516-18046327
Length = 603
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = -3
Query: 160 SPSRQPFCSSTERPSSAPPPTHNAELTSSTG 68
S SRQ F S T PSSAP P + TSS G
Sbjct: 111 SSSRQ-FHSGTGAPSSAPVPPPPSATTSSAG 140
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 493 PCPVS*GGPPASEEWGARGGGGSHHRDG 410
PC S P + W AR G GS H G
Sbjct: 46 PCTSSNAAPKPAMAWQARSGNGSLHPPG 73
>06_03_0601 - 22650370-22650623,22650786-22650792
Length = 86
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 160 SPSRQPFCSSTERPSSAP-PPTHN--AELTSSTGL 65
SPS +P E+P P PP+HN A +T + G+
Sbjct: 12 SPSGEPIHEGPEKPIEPPGPPSHNLHAAVTENEGI 46
>02_04_0242 + 21210062-21210541
Length = 159
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 475 GGPPASEEWGARGGGGSHHRDG 410
G PPA+ ARGGGG DG
Sbjct: 104 GRPPAAATTTARGGGGGDDDDG 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,869,261
Number of Sequences: 37544
Number of extensions: 244749
Number of successful extensions: 1427
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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