Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0754
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.023
SB_18459| Best HMM Match : Toxin_18 (HMM E-Value=2.1)                  28   4.6  
SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)                28   4.6  
SB_58979| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_31489| Best HMM Match : Ion_trans (HMM E-Value=0.015)               28   6.1  
SB_24353| Best HMM Match : CUB (HMM E-Value=0.18)                      27   8.0  

>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 26/76 (34%), Positives = 35/76 (46%)
 Frame = +3

Query: 3   DFDVLRHDIAFTVFRSEHELHNPVDEVNSALCVGGGADEGRSVLEQKGWREGEHYHRVEP 182
           DFDV++ D+ FTVFR  H+        NS      G+    + L   G   G     VE 
Sbjct: 142 DFDVMKADVTFTVFR--HKRPREAMSSNSL-----GSFGSNTSLNSAGVIAGVDASVVEK 194

Query: 183 TLLCHDGESIQGSHVM 230
              C DGES+Q ++ M
Sbjct: 195 PRHCRDGESVQVNNAM 210


>SB_18459| Best HMM Match : Toxin_18 (HMM E-Value=2.1)
          Length = 150

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 490 CPVS*GGPPASEEWGARGGGGSHHRDGQELPVDLPLRHENPLAPDCR 350
           C     G  AS    +RGGGG      +  PV LP    +  AP+ R
Sbjct: 104 CSPEAAGAVASAHCSSRGGGGRLPDTSEAFPVCLPRTAPSSAAPNSR 150


>SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)
          Length = 739

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
 Frame = +3

Query: 66  NPVDEVNSALCVGGGAD-EGRSVLEQKGWREG-----EHYHRVEP---TLLCHD--GESI 212
           N  D + S++     AD +GR +LE+ GW+ G     E   RVEP    LLC++      
Sbjct: 507 NQPDAIPSSVHRPINADNKGRKLLEKMGWKTGEGLGKEKSGRVEPYGHALLCNETGWNGC 566

Query: 213 QGSHVMRCSGAYVLQ 257
             +H++   G +V++
Sbjct: 567 YATHIVLRKGTHVVK 581


>SB_58979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 439 GGGGSHHRDGQELPVDLPLRH 377
           GGGG H + G ++ +D+P +H
Sbjct: 380 GGGGWHGKKGGDIRIDIPSQH 400


>SB_31489| Best HMM Match : Ion_trans (HMM E-Value=0.015)
          Length = 382

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 238 LQRITCEPCMLSPSWHSRVGSTRW*CSPSRQPFCSSTERPSSAPPPTHNAELTSST 71
           LQ IT +  + SP+  SR        +PS +P  +   RP+SA P   ++ +  ST
Sbjct: 161 LQGITRQDAIKSPAMLSR-------SAPSLRPAITDRRRPTSAKPSIESSRMVGST 209


>SB_24353| Best HMM Match : CUB (HMM E-Value=0.18)
          Length = 564

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 163 CSPSRQPFCSSTERPSSAPPPTH 95
           C+  R P   +T RPSS  PPT+
Sbjct: 245 CAELRDPNVRTTSRPSSEMPPTY 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,616,928
Number of Sequences: 59808
Number of extensions: 233132
Number of successful extensions: 792
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)