Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0754
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.70 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   0.92 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.5  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 163 CSPSRQPFCSSTERPSSAPPPTHNAELTSSTGLWSSCSLLNTVNAMSCLRTS 8
           CSP    F  +T +        HN  + +STG+    SL+  V AM  + T+
Sbjct: 154 CSPKLLAFDLNTSKLLKQIEIPHNIAVNASTGMGGPVSLV--VQAMDPMNTT 203


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 192 CHDGESIQGSHVMRC 236
           CH G S+  S +MRC
Sbjct: 136 CHSGSSLTKSRLMRC 150


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 211 MLSPSWHSRVGSTRW*C 161
           +LSPS H  + S  W C
Sbjct: 364 ILSPSIHDNICSNGWIC 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,426
Number of Sequences: 438
Number of extensions: 1799
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)