Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0754
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03120.1 68417.m00425 proline-rich family protein similar to ...    29   2.1  
At3g06130.1 68416.m00704 heavy-metal-associated domain-containin...    29   2.8  
At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family...    29   2.8  
At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family...    29   2.8  
At5g44100.1 68418.m05396 casein kinase, putative similar to dual...    28   5.0  
At5g02310.1 68418.m00154 eceriferum3 protein, putative similar t...    28   5.0  
At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,...    28   5.0  
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains...    27   6.5  
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea...    27   8.7  

>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
           small nuclear ribonucleoprotein C; contains proline rich
           extensin domains, INTERPRO:IPR002965
          Length = 207

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -3

Query: 493 PCPVS*GGPPASEEWGARGGGGSHHRDGQELPVDLPLRHENPLAP 359
           P P   GGPP       +GGG   + +G   P   P  H NP AP
Sbjct: 142 PIPGQGGGPPGMAPIPGQGGGPPPNYNGLPPP---PPYHTNPAAP 183


>At3g06130.1 68416.m00704 heavy-metal-associated domain-containing
           protein contains Pfam heavy metal associated domain
           PF00403
          Length = 473

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 475 GGPPASEEWGARGGGGSHHRDGQ 407
           GGP    + G + GGG H +DG+
Sbjct: 280 GGPGNQNQGGGKNGGGGHPQDGK 302


>At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family
           protein contains Pfam domain PF00730: HhH-GPD
           superfamily base excision DNA repair protein
          Length = 394

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 157 PSRQPFCSSTERPSSAPPPTHNAELTSSTGLWSSCSLLNTVNA 29
           P  QP   + E P+  PP T++ +  SS G+  S     T+ A
Sbjct: 15  PPNQPESPNHETPNPIPPETNDDDSASSAGVSGSIVSSTTIEA 57


>At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family
           protein contains Pfam domain PF00730: HhH-GPD
           superfamily base excision DNA repair protein
          Length = 391

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 157 PSRQPFCSSTERPSSAPPPTHNAELTSSTGLWSSCSLLNTVNA 29
           P  QP   + E P+  PP T++ +  SS G+  S     T+ A
Sbjct: 15  PPNQPESPNHETPNPIPPETNDDDSASSAGVSGSIVSSTTIEA 57


>At5g44100.1 68418.m05396 casein kinase, putative similar to dual
           specificity kinase 1 gi|1216484|gb|AAB47968
          Length = 476

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -3

Query: 178 STRW*CSPSRQPFCSSTERPSSAPPPTH---NAELTSSTG 68
           S+R+  S SR+   +S+ RPSSA  P+    ++ L SS+G
Sbjct: 385 SSRYRASSSRKAVAASSSRPSSAGGPSESRTSSRLVSSSG 424


>At5g02310.1 68418.m00154 eceriferum3 protein, putative similar to
            eceriferum3 GI:1669655 from [Arabidopsis thaliana]
          Length = 2006

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 57   ELHNPVDEVNSALCVGGGADEGRSVLEQKGWREGEHYH 170
            EL   +D+V S  C   G ++G+  L+   W+E + YH
Sbjct: 900  ELQEVLDDV-SVYCNPSGMNQGKYSLQSSCWKELDLYH 936


>At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,
           putative similar to CAAT-box DNA binding protein subunit
           B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
           Pfam PF00808 : Histone-like transcription factor
           (CBF/NF-Y) and archaeal histone
          Length = 228

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 439 GGGGSHHRDGQELPVDLPLRHENPLAP 359
           GGGGSH   G + P  L +R ++   P
Sbjct: 9   GGGGSHESGGDQSPRSLNVREQDRFLP 35


>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 392

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 157 PSR-QPFCSSTERPSSAPPPTHNAELTSSTGLWSSC 53
           P+R QP  ++   P  + P T +  L    GLWSSC
Sbjct: 287 PTRLQPATTTLGAPKGSTPLTLSGLLNCIDGLWSSC 322


>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400) (2
           weak); similar to Vegetatible incompatibility protein
           HET-E-1 (SP:Q00808) {Podospora anserina}
          Length = 815

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 469 PPASEEWGARGGGGSHHRDGQELPVDLPLRHENPLAPD 356
           P +S++W   G   +H  D + L V +P+  E+P   D
Sbjct: 330 PSSSQKWDYIGYVKAHTHDIRALTVAVPISREDPFPDD 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,590,823
Number of Sequences: 28952
Number of extensions: 156859
Number of successful extensions: 672
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)