Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0752
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135           28   7.0  
06_01_0985 - 7646772-7647451,7647957-7648107                           28   9.2  
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180...    28   9.2  
03_05_0155 - 21307001-21307239,21308217-21308320,21308564-213087...    28   9.2  

>09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135
          Length = 485

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 4   SARGGSKTWWVCSQRISSRCPAAMITF 84
           S+R G KT W+CS   S + P  ++ F
Sbjct: 415 SSRRGFKTLWLCSSHDSPQLPIGLLLF 441


>06_01_0985 - 7646772-7647451,7647957-7648107
          Length = 276

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 159 YSEKCNAVSKILKKKALCVITNIINDSLVASSALNLLDL 275
           + E+C  V    +++ALC         ++ S AL +LD+
Sbjct: 205 FEEECKVVGNYAEQQALCTCGQFERTGILCSHALKVLDV 243


>04_04_1242 -
           32016553-32016857,32017628-32017784,32017871-32018089,
           32018184-32018470,32018629-32019934,32020021-32020178,
           32020250-32020335,32023106-32023173,32023297-32023340,
           32023418-32023490,32023605-32023684,32023774-32023867,
           32023981-32024151,32024463-32024557,32025049-32025128,
           32025137-32025333,32025896-32026183
          Length = 1235

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 4   SARGGSKTWWVCSQRISSRCPAAMITFENKPIKI 105
           + RG S + W C +    R  AAM+T +  P+ I
Sbjct: 615 TVRGSSPSLWKCVELDDIRFEAAMVTADGSPLLI 648


>03_05_0155 -
           21307001-21307239,21308217-21308320,21308564-21308772,
           21308773-21308838,21308933-21308997,21309716-21309942,
           21310156-21310269,21310515-21310522,21310964-21311053,
           21311167-21311359,21312934-21313024,21313364-21313496,
           21314756-21314896,21315017-21315078,21315159-21315246,
           21315523-21315952,21316067-21316173
          Length = 788

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 76  ITFENKPIKINSKHTH-KNF*HILMPNNYILKNATPFQKY 192
           +TFEN+P+   SKH   +NF H    N Y  K   P  +Y
Sbjct: 680 LTFENQPLLAGSKHVKVRNFLH----NCYSKKEKEPGDRY 715


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,049,052
Number of Sequences: 37544
Number of extensions: 397859
Number of successful extensions: 669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)