Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0752
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  

>SB_50821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +1

Query: 424 SIT*MRHLL*DTSSKDLMYSYNGCPNLQTETHYCFTPEIGGAVVPTRADSQXVLPPVKTP 603
           +I  ++ LL D+ +     S+  C   +TE+  CFTP        T+ +SQ    P KT 
Sbjct: 13  NIVDLKALLGDSDAASGADSHRVCTPTKTESQSCFTP--------TKTESQSCFTPTKTE 64

Query: 604 DTRTLFP 624
               L P
Sbjct: 65  SPSCLHP 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,888,046
Number of Sequences: 59808
Number of extensions: 450552
Number of successful extensions: 1000
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)