Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0750
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.28 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.28 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   0.64 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    25   0.85 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    25   0.85 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.0  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   3.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 173  ISKDDNTSPVDISTSSNNQSSNRIDTKTKLKTIDMFMD 286
            +  D++ S  D  TSS  +SSN++D   KLK I    D
Sbjct: 1780 VESDESESDPDQLTSSRTESSNQLDA-GKLKHIRAVSD 1816


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 173  ISKDDNTSPVDISTSSNNQSSNRIDTKTKLKTIDMFMD 286
            +  D++ S  D  TSS  +SSN++D   KLK I    D
Sbjct: 1776 VESDESESDPDQLTSSRTESSNQLDA-GKLKHIRAVSD 1812


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +2

Query: 47  KRLETGDKGYSDKYVKRKEYTK---KHRHTTPMKKHNNTNYSHSIISKDDNTSPVDISTS 217
           KR     +   + Y   KEY K   + +  +  K+    +    IIS   N    +IS  
Sbjct: 37  KRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYISNISNY 96

Query: 218 SNNQSSNR 241
           +NN + N+
Sbjct: 97  NNNNNYNK 104


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 14/66 (21%), Positives = 31/66 (46%)
 Frame = +2

Query: 47  KRLETGDKGYSDKYVKRKEYTKKHRHTTPMKKHNNTNYSHSIISKDDNTSPVDISTSSNN 226
           KR     +   + Y   +EY +K+R T+  +  + T    S  +K  +++  +    +NN
Sbjct: 259 KRYSRSREREQNSYKNEREY-RKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNN 317

Query: 227 QSSNRI 244
            +S ++
Sbjct: 318 YNSKKL 323


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 14/66 (21%), Positives = 31/66 (46%)
 Frame = +2

Query: 47  KRLETGDKGYSDKYVKRKEYTKKHRHTTPMKKHNNTNYSHSIISKDDNTSPVDISTSSNN 226
           KR     +   + Y   +EY +K+R T+  +  + T    S  +K  +++  +    +NN
Sbjct: 270 KRYSRSREREQNSYKNEREY-RKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNN 328

Query: 227 QSSNRI 244
            +S ++
Sbjct: 329 YNSKKL 334


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +2

Query: 83  KYVKRKEYTKKHRHTTPMKKHNNTNYSHS----IISKDDNTSPVDISTSSNNQSSNR 241
           K  K +   +K+R T+  +  + T    S    IIS   N    +IS  +NN + N+
Sbjct: 286 KSYKNENSYRKYRETSKERSRDKTERERSKERKIISSLSNNYISNISNYNNNNNYNK 342


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 362 GKHSPNKQT--GVSHKENSIKKLISKETQTINKST 460
           G +  N +T  G+SH+E+   K +  ET  +++ +
Sbjct: 40  GNYINNFETSNGISHQESGQPKQVDNETPVVSQGS 74


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 161 SHSIISKDDNTSPVDISTSSNNQSSNRIDTKTKLKTIDMFMDQPK 295
           +H II  D+NT+ + I    ++ SS      T L +I+  +  PK
Sbjct: 202 AHCII--DENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPK 244


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 296 KSNLHQAHRNTSIAPSKNG 352
           K+ L  A RNTSIA S+ G
Sbjct: 158 KTTLLDALRNTSIAKSEFG 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,472
Number of Sequences: 438
Number of extensions: 3699
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)