Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0749
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    29   0.70 
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    26   5.0  
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    25   8.7  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.7  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 227 YHHPAYFSREAVMRFGLKGGAAVVTILETLELISQGG 117
           +  P+ F+ E V+   L GG AVV +  TLE I Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 589 FIIKASGSSFSLKILTYCLCYFIYSLFYVTYILH 690
           F++K + +S+S  +++Y  C FI SLF+    +H
Sbjct: 68  FVLKTN-NSYSAILISYYRCIFIISLFHRPLTIH 100


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 167 PHPSNRNALLLHG*NRQGDGTYP 235
           PHP N   +LL G N Q D + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 445 NWGSTIVNLNTYTDSTYLLIS 507
           N GSTI +L  Y D TY + S
Sbjct: 189 NSGSTITDLQFYPDRTYFITS 209


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 50  AHSPPGVKWLLEPIDIYNVNTATHLEI*VLRSQE*LQ 160
           A  PP +K    P+DI N++ A  L+   L  +E LQ
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLKKIDLLLEEILQ 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,486
Number of Sequences: 5004
Number of extensions: 55763
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)