Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0749
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    30   2.0  
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z70754-7|CAA94778.1|  228|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
           protein F48E3.8a protein.
          Length = 2427

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 141 GLKNSYNGCPTLQTETHYCFTAEIGRVMVPTRADSQEVLPPVIKQCEDFRECVG 302
           G+K S NGC  +  +   C   E G + +    + +EV PP  K C    +C G
Sbjct: 133 GMKKSSNGCTFVNND---C--KERGHIFISEIGECREVFPPGGKGCSHNLQCSG 181


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
           protein F48E3.8b protein.
          Length = 1299

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 141 GLKNSYNGCPTLQTETHYCFTAEIGRVMVPTRADSQEVLPPVIKQCEDFRECVG 302
           G+K S NGC  +  +   C   E G + +    + +EV PP  K C    +C G
Sbjct: 133 GMKKSSNGCTFVNND---C--KERGHIFISEIGECREVFPPGGKGCSHNLQCSG 181


>Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical
           protein F13E6.4 protein.
          Length = 442

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
 Frame = +1

Query: 274 NVRILGSALVDCPLRVYCAI---SSGNLIGHDVDQ*FPKWSISTPRGL*QTARGLRQRKK 444
           N +++ S LVD P   Y AI   SS  +  HD +  + +   +      QT   L Q   
Sbjct: 309 NAQLINSGLVDSPQPPYQAISPMSSTMMHSHDPNFMYQQQQQAQNSQQQQTPHTLHQIPN 368

Query: 445 NWGSTIVNLNTYTDSTYLLISHYLIISRHH*PRRFKINP--YKID 573
            + ++ +N ++  +  Y ++SH   +   H P      P  Y ID
Sbjct: 369 QYQNSQMNDDSAMEVDYSMVSHPQQLQHQHQPHMHNNMPSNYVID 413


>Z70754-7|CAA94778.1|  228|Caenorhabditis elegans Hypothetical
           protein F58E6.8 protein.
          Length = 228

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 589 FIIKASGSSFSLKILTYCLCYFIYSLFYVTYILHSRYK 702
           F I  S  SF++ I+   L + +  LF +TY LHS ++
Sbjct: 149 FRIDRSSISFNI-IICIVLAFIVIVLFLITYALHSTFR 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,673,765
Number of Sequences: 27780
Number of extensions: 312458
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)