Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0749
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    29   0.046
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    29   0.046
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.3  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 29.1 bits (62), Expect = 0.046
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 467 ISTHTLIVPIYLYHTIL*YQDIISRGDLRLILTKLTSNVDNL 592
           + T T + P Y +HT + Y+ +  R + RL L +L S+ + L
Sbjct: 29  LRTRTKLQPTYFHHTYIIYESLCGRHEKRL-LNELLSSYNTL 69


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 29.1 bits (62), Expect = 0.046
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 467 ISTHTLIVPIYLYHTIL*YQDIISRGDLRLILTKLTSNVDNL 592
           + T T + P Y +HT + Y+ +  R + RL L +L S+ + L
Sbjct: 29  LRTRTKLQPTYFHHTYIIYESLCGRHEKRL-LNELLSSYNTL 69


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 299 NALPKILTLFYNWW*DLL*VRAGRYHHPAY 210
           N  P +  +F NW   LL +R   Y  P Y
Sbjct: 345 NMSPWVRQVFLNWMPRLLMMRRTPYSTPEY 374


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 373  ITDLHRVR*GFRRRSHNKPSTDNQPT 296
            I  L +++ G R    ++PST N P+
Sbjct: 1891 IDSLKKLKLGLRSSLWSRPSTQNNPS 1916


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 373  ITDLHRVR*GFRRRSHNKPSTDNQPT 296
            I  L +++ G R    ++PST N P+
Sbjct: 1887 IDSLKKLKLGLRSSLWSRPSTQNNPS 1912


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 319 PSTDNQPTHSLKSSHCFITGGRTSCESARV 230
           P++  QP+ +   SH     GR++C S  V
Sbjct: 275 PNSSLQPSLASHHSHLSSALGRSACHSPGV 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,585
Number of Sequences: 438
Number of extensions: 3778
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)