Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0749
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12010.1 68416.m01488 expressed protein contains Prosite PS00...    31   1.1  
At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138...    30   1.9  
At4g16650.1 68417.m02516 expressed protein contains Pfam PF03138...    28   7.6  
At2g14010.1 68415.m01557 hypothetical protein  and genefinder          28   7.6  

>At3g12010.1 68416.m01488 expressed protein contains Prosite
           PS00626: Regulator of chromosome condensation (RCC1)
           signature 2
          Length = 685

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +2

Query: 500 LYHTIL*YQD-IISRGDLRLILTKLTSNV-DNLLLKHQV 610
           L H    Y+D ++ +G L +  +KL+ NV DNLLL HQ+
Sbjct: 243 LLHLYRFYRDAVVQQGSLPIYSSKLSVNVVDNLLLVHQI 281


>At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 677

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 378 WESLIYIVSDEVSGGDRTINP 316
           W+++IY+   EV GG RT+ P
Sbjct: 352 WDTIIYVAGGEVFGGQRTLIP 372


>At4g16650.1 68417.m02516 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator like protein'  based on similarity to
           axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 549

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 375 ESLIYIVSDEVSGGDRTINPQRTI 304
           ++ IY+ S E+ GG++T+ P R +
Sbjct: 360 DTYIYVASGEIYGGEKTLKPLREL 383


>At2g14010.1 68415.m01557 hypothetical protein  and genefinder
          Length = 833

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 76  VTGAHRHLQRKYRYPP*DISSKVSRIVTTAAPPFKPKRITASRLK*AG 219
           V G +  +QR+   PP ++ ++   I  +   P  P+  T +++K +G
Sbjct: 433 VLGEYTLVQRRPTLPPVEVDTRSGEIAASVEKPLSPQADTIAQVKGSG 480


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,579,702
Number of Sequences: 28952
Number of extensions: 287365
Number of successful extensions: 563
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)