Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0748
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    29   0.50 
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   4.6  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    26   4.6  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    26   6.1  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    26   6.1  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    26   6.1  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    25   8.1  

>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 287 NRQQSSSPGVRN--RFPSTSSTDENESGTDGEADRSRRQTILHGVSGMQPQGQIVTI 451
           N  + S P V++  + P  + + +NESG     D    ++    V   QPQ +I T+
Sbjct: 588 NASEESYPNVKHISKLPLINDSSDNESGNQENDDAVANESTKVVVDNQQPQPKISTV 644


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 221 PFRSGRAVLVRDRPWEVT*LITQSMQ 144
           PF+S    +++D PW +T  + Q++Q
Sbjct: 466 PFKSNIFYVLKDVPWSITKYLPQALQ 491


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 236 VGVGMPFRSGRAVLVRDRPWEVT*LITQSMQTLCFGSGPLTTTV 105
           VG+    R+G+ VLV D  +E    +  S+  +  G GP+T  +
Sbjct: 263 VGINAVQRNGKRVLVGDVHFESASKVASSITPVPGGVGPMTVAM 306


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +2

Query: 299 SSSPGVRNRFPSTSSTDENESGTDGEADRSRRQTILHGVSGMQPQ 433
           SS P V  + PS++   +  +G+D + +  +R  ++  +  + P+
Sbjct: 297 SSPPSVPQKIPSSNHKSQQANGSD-QGNEGKRMALIQQLLALTPE 340


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 230 HRRDVRELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDENES 361
           H R + E   + + D+  A R QSS  G  N   STSST    S
Sbjct: 442 HERSLLEQLADALNDS-TARRTQSSPSGT-NSSTSTSSTSSKHS 483


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 188 LSQEQRDRTEMAFQHRRDVRELTREIIRDARVANRQQ-SSSPGVRNRFPSTSSTDENESG 364
           L+ +  D  E+  Q  R V+E   +  + ++  N ++  +S  V N   +  S+DENE+ 
Sbjct: 109 LNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAKGSSDENEAN 168

Query: 365 T 367
           T
Sbjct: 169 T 169


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -1

Query: 95  QYIKLHLTALYLNKNKNNRHELRS--VNGIA 9
           QY+ L L ALYL+++  +R E R+  ++G+A
Sbjct: 497 QYVALVLMALYLSRDSVSRLERRNEIIDGLA 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,198
Number of Sequences: 5004
Number of extensions: 57812
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)