Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0748
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41547-5|AAX88831.1| 272|Caenorhabditis elegans C.elegans homeo... 66 2e-11
AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice... 65 4e-11
AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice... 65 4e-11
AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated... 65 4e-11
AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated... 65 4e-11
AJ000533-1|CAA04166.1| 265|Caenorhabditis elegans CEH-25 homeob... 59 3e-09
AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice... 59 3e-09
AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice... 59 3e-09
AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated... 59 3e-09
AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated... 59 3e-09
AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated... 59 3e-09
Z81045-1|CAB02816.1| 356|Caenorhabditis elegans Hypothetical pr... 58 6e-09
U40935-7|AAA81691.3| 338|Caenorhabditis elegans C.elegans homeo... 56 2e-08
U01303-1|AAC46471.1| 338|Caenorhabditis elegans Ceh-20 protein. 56 2e-08
Z68114-11|CAA92154.1| 329|Caenorhabditis elegans Hypothetical p... 53 2e-07
AC006692-6|AAM48547.1| 153|Caenorhabditis elegans Uncoordinated... 50 1e-06
U70857-9|AAB09174.1| 261|Caenorhabditis elegans C.elegans homeo... 40 0.001
U70857-8|AAB09173.2| 256|Caenorhabditis elegans C.elegans homeo... 39 0.004
Z81085-1|CAB03112.3| 263|Caenorhabditis elegans Hypothetical pr... 36 0.022
Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical pr... 35 0.050
AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical... 33 0.20
Z77670-4|CAB01249.2| 439|Caenorhabditis elegans Hypothetical pr... 31 0.61
AF325178-1|AAG49583.1| 439|Caenorhabditis elegans CEH-32 protein. 31 0.61
U55856-2|AAA98021.1| 197|Caenorhabditis elegans Touch abnormal ... 31 0.81
AF026206-1|AAK39306.1| 260|Caenorhabditis elegans Hypothetical ... 31 1.1
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 30 1.4
Z11795-1|CAA77838.1| 130|Caenorhabditis elegans pceh16-1 protei... 30 1.9
U40933-7|AAA81676.4| 122|Caenorhabditis elegans C.elegans homeo... 30 1.9
U40933-6|AAQ23123.1| 199|Caenorhabditis elegans C.elegans homeo... 30 1.9
Z82279-3|CAD62039.1| 106|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z82279-2|CAB05260.2| 256|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z11794-1|CAA77837.1| 66|Caenorhabditis elegans ceh16-1 protein... 29 2.5
AY151210-1|AAN72827.1| 106|Caenorhabditis elegans COG-1B protein. 29 2.5
AY151209-1|AAN72826.1| 256|Caenorhabditis elegans COG-1A protein. 29 2.5
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 29 2.5
AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in ... 29 2.5
AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in ... 29 2.5
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ... 29 2.5
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 29 2.5
Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical p... 29 3.3
Z73898-9|CAA98066.2| 913|Caenorhabditis elegans Hypothetical pr... 29 4.3
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 29 4.3
AL032625-1|CAA21523.1| 326|Caenorhabditis elegans Hypothetical ... 29 4.3
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 28 5.7
Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z48582-7|CAA88468.2| 308|Caenorhabditis elegans Hypothetical pr... 28 5.7
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 28 5.7
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 28 5.7
AF039720-2|AAB96698.1| 180|Caenorhabditis elegans C.elegans hom... 28 7.6
>U41547-5|AAX88831.1| 272|Caenorhabditis elegans C.elegans homeobox
protein 60 protein.
Length = 272
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/66 (45%), Positives = 42/66 (63%)
Frame = +2
Query: 452 RKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILP 631
RKRR N K++ IL+ W +DHR N YPSD EK L+++ N+ + QV NWF N R R
Sbjct: 141 RKRR-NFDKNTTDILQNWFHDHRQNPYPSDQEKAELAKQCNIKISQVNNWFGNQRIRTKQ 199
Query: 632 EMIRRE 649
+ +R +
Sbjct: 200 QALRMQ 205
>AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice
variant 1b-7a protein.
Length = 523
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +2
Query: 428 PQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFI 607
P G + + RG K + L++WL+ + + YPS+ +K L++E L++LQV NWFI
Sbjct: 344 PNGGRIGKSRGRGIFPKQATNRLRQWLFQNLTHPYPSEEQKKQLAKETGLTILQVNNWFI 403
Query: 608 NARRRILPEMI 640
NARRRI+ MI
Sbjct: 404 NARRRIVQPMI 414
>AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice
variant 1a-7a protein.
Length = 560
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +2
Query: 428 PQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFI 607
P G + + RG K + L++WL+ + + YPS+ +K L++E L++LQV NWFI
Sbjct: 381 PNGGRIGKSRGRGIFPKQATNRLRQWLFQNLTHPYPSEEQKKQLAKETGLTILQVNNWFI 440
Query: 608 NARRRILPEMI 640
NARRRI+ MI
Sbjct: 441 NARRRIVQPMI 451
>AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated
protein 62, isoform e protein.
Length = 523
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +2
Query: 428 PQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFI 607
P G + + RG K + L++WL+ + + YPS+ +K L++E L++LQV NWFI
Sbjct: 344 PNGGRIGKSRGRGIFPKQATNRLRQWLFQNLTHPYPSEEQKKQLAKETGLTILQVNNWFI 403
Query: 608 NARRRILPEMI 640
NARRRI+ MI
Sbjct: 404 NARRRIVQPMI 414
>AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated
protein 62, isoform f protein.
Length = 560
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +2
Query: 428 PQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFI 607
P G + + RG K + L++WL+ + + YPS+ +K L++E L++LQV NWFI
Sbjct: 381 PNGGRIGKSRGRGIFPKQATNRLRQWLFQNLTHPYPSEEQKKQLAKETGLTILQVNNWFI 440
Query: 608 NARRRILPEMI 640
NARRRI+ MI
Sbjct: 441 NARRRIVQPMI 451
>AJ000533-1|CAA04166.1| 265|Caenorhabditis elegans CEH-25 homeobox
protein protein.
Length = 265
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/96 (35%), Positives = 52/96 (54%)
Frame = +2
Query: 353 NESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAY 532
+E G D R + +G Q G+ RK +K ++ + WL+ + + Y
Sbjct: 66 DEFSVCGSNDDGRDSVLSDSANGSQ-NGK----RKVPKVFSKEAITKFRAWLFHNLTHPY 120
Query: 533 PSDAEKIALSQEANLSVLQVCNWFINARRRILPEMI 640
PS+ +K L++E L++LQV NWFINARRRI+ MI
Sbjct: 121 PSEEQKKQLAKETGLTILQVNNWFINARRRIVQPMI 156
>AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice
variant 1b-7b protein.
Length = 527
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/96 (35%), Positives = 52/96 (54%)
Frame = +2
Query: 353 NESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAY 532
+E G D R + +G Q G+ RK +K ++ + WL+ + + Y
Sbjct: 328 DEFSVCGSNDDGRDSVLSDSANGSQ-NGK----RKVPKVFSKEAITKFRAWLFHNLTHPY 382
Query: 533 PSDAEKIALSQEANLSVLQVCNWFINARRRILPEMI 640
PS+ +K L++E L++LQV NWFINARRRI+ MI
Sbjct: 383 PSEEQKKQLAKETGLTILQVNNWFINARRRIVQPMI 418
>AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice
variant 1a-7b protein.
Length = 564
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/96 (35%), Positives = 52/96 (54%)
Frame = +2
Query: 353 NESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAY 532
+E G D R + +G Q G+ RK +K ++ + WL+ + + Y
Sbjct: 365 DEFSVCGSNDDGRDSVLSDSANGSQ-NGK----RKVPKVFSKEAITKFRAWLFHNLTHPY 419
Query: 533 PSDAEKIALSQEANLSVLQVCNWFINARRRILPEMI 640
PS+ +K L++E L++LQV NWFINARRRI+ MI
Sbjct: 420 PSEEQKKQLAKETGLTILQVNNWFINARRRIVQPMI 455
>AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated
protein 62, isoform g protein.
Length = 490
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/96 (35%), Positives = 52/96 (54%)
Frame = +2
Query: 353 NESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAY 532
+E G D R + +G Q G+ RK +K ++ + WL+ + + Y
Sbjct: 291 DEFSVCGSNDDGRDSVLSDSANGSQ-NGK----RKVPKVFSKEAITKFRAWLFHNLTHPY 345
Query: 533 PSDAEKIALSQEANLSVLQVCNWFINARRRILPEMI 640
PS+ +K L++E L++LQV NWFINARRRI+ MI
Sbjct: 346 PSEEQKKQLAKETGLTILQVNNWFINARRRIVQPMI 381
>AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated
protein 62, isoform b protein.
Length = 527
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/96 (35%), Positives = 52/96 (54%)
Frame = +2
Query: 353 NESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAY 532
+E G D R + +G Q G+ RK +K ++ + WL+ + + Y
Sbjct: 328 DEFSVCGSNDDGRDSVLSDSANGSQ-NGK----RKVPKVFSKEAITKFRAWLFHNLTHPY 382
Query: 533 PSDAEKIALSQEANLSVLQVCNWFINARRRILPEMI 640
PS+ +K L++E L++LQV NWFINARRRI+ MI
Sbjct: 383 PSEEQKKQLAKETGLTILQVNNWFINARRRIVQPMI 418
>AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated
protein 62, isoform a protein.
Length = 564
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/96 (35%), Positives = 52/96 (54%)
Frame = +2
Query: 353 NESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAY 532
+E G D R + +G Q G+ RK +K ++ + WL+ + + Y
Sbjct: 365 DEFSVCGSNDDGRDSVLSDSANGSQ-NGK----RKVPKVFSKEAITKFRAWLFHNLTHPY 419
Query: 533 PSDAEKIALSQEANLSVLQVCNWFINARRRILPEMI 640
PS+ +K L++E L++LQV NWFINARRRI+ MI
Sbjct: 420 PSEEQKKQLAKETGLTILQVNNWFINARRRIVQPMI 455
>Z81045-1|CAB02816.1| 356|Caenorhabditis elegans Hypothetical
protein C36F7.1 protein.
Length = 356
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/62 (43%), Positives = 38/62 (61%)
Frame = +2
Query: 449 IRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRIL 628
I+KR N + + LK WL+ HR N YPS A+K+ L+ +++ QV WF NARRR+
Sbjct: 117 IKKR--NATREATAPLKDWLHSHRKNPYPSKADKVMLAVGTGMTLTQVSTWFANARRRLK 174
Query: 629 PE 634
E
Sbjct: 175 KE 176
>U40935-7|AAA81691.3| 338|Caenorhabditis elegans C.elegans homeobox
protein 20 protein.
Length = 338
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/73 (32%), Positives = 42/73 (57%)
Frame = +2
Query: 431 QGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFIN 610
+ + + R++R N +K + ++L + Y H N YPS+ K L+++ N++V QV NWF N
Sbjct: 182 RSRFLDARRKRRNFSKQATEVLNEYFYGHLSNPYPSEEAKEDLARQCNITVSQVSNWFGN 241
Query: 611 ARRRILPEMIRRE 649
R R M + +
Sbjct: 242 KRIRYKKNMAKAQ 254
>U01303-1|AAC46471.1| 338|Caenorhabditis elegans Ceh-20 protein.
Length = 338
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/73 (32%), Positives = 42/73 (57%)
Frame = +2
Query: 431 QGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFIN 610
+ + + R++R N +K + ++L + Y H N YPS+ K L+++ N++V QV NWF N
Sbjct: 182 RSRFLDARRKRRNFSKQATEVLNEYFYGHLSNPYPSEEAKEDLARQCNITVSQVSNWFGN 241
Query: 611 ARRRILPEMIRRE 649
R R M + +
Sbjct: 242 KRIRYKKNMAKAQ 254
>Z68114-11|CAA92154.1| 329|Caenorhabditis elegans Hypothetical
protein F17A2.5 protein.
Length = 329
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +2
Query: 422 MQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNW 601
+Q + + + R++R N +K S +IL + + + YPS+ K AL+ + N+SV QV NW
Sbjct: 178 IQLKKRYLDARRKRRNFSKTSTEILNEYFLANINHPYPSEEVKQALAMQCNISVAQVSNW 237
Query: 602 FINARRRILPEMIRRE 649
F N R R M + E
Sbjct: 238 FGNKRIRYKKTMAKNE 253
>AC006692-6|AAM48547.1| 153|Caenorhabditis elegans Uncoordinated
protein 62, isoform c protein.
Length = 153
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +2
Query: 530 YPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMI 640
YPS+ +K L++E L++LQV NWFINARRRI+ MI
Sbjct: 8 YPSEEQKKQLAKETGLTILQVNNWFINARRRIVQPMI 44
>U70857-9|AAB09174.1| 261|Caenorhabditis elegans C.elegans homeobox
protein 33 protein.
Length = 261
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 524 NAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
N+YPS EK L+++ +L+V QV NWF N R+R
Sbjct: 155 NSYPSPREKRELAEKTHLTVTQVSNWFKNRRQR 187
>U70857-8|AAB09173.2| 256|Caenorhabditis elegans C.elegans homeobox
protein 34 protein.
Length = 256
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2
Query: 530 YPSDAEKIALSQEANLSVLQVCNWFINARRR 622
YPS +K L+Q+ LS++QV NWF N R+R
Sbjct: 158 YPSVEDKRRLAQQTELSIIQVSNWFKNKRQR 188
>Z81085-1|CAB03112.3| 263|Caenorhabditis elegans Hypothetical
protein F46F3.1 protein.
Length = 263
Score = 36.3 bits (80), Expect = 0.022
Identities = 26/80 (32%), Positives = 40/80 (50%)
Frame = +2
Query: 377 ADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIA 556
A+ +R QT + Q +++ RKRR + V +L+R + N Y S A++
Sbjct: 74 ANFNRFQTNQLNLGLTTQQNMMISRRKRRVLFSPQQVHVLER---KFQINRYLSAADREN 130
Query: 557 LSQEANLSVLQVCNWFINAR 616
L++ NLS QV WF N R
Sbjct: 131 LAKSINLSATQVKIWFQNQR 150
>Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical
protein F56A12.1 protein.
Length = 335
Score = 35.1 bits (77), Expect = 0.050
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 482 SVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
S K LK++ + YP+ +K +S+ L ++Q+ NWF N R+R
Sbjct: 228 SRKFLKQFF--RNVSEYPTQEQKREISRATGLKIVQISNWFKNRRQR 272
>AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical
protein C17H12.9 protein.
Length = 459
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 533 PSDAEKIALSQEANLSVLQVCNWFINARRR 622
PS +I +SQ+ NL V N+F+NARRR
Sbjct: 346 PSREMQITISQQLNLDPTTVANFFMNARRR 375
>Z77670-4|CAB01249.2| 439|Caenorhabditis elegans Hypothetical
protein W05E10.3 protein.
Length = 439
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 491 ILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
+L+ W + + YP+ +K L+ L+ +QV NWF N R+R
Sbjct: 199 LLREW---YLKDPYPNPPKKKELANATGLTQMQVGNWFKNRRQR 239
>AF325178-1|AAG49583.1| 439|Caenorhabditis elegans CEH-32 protein.
Length = 439
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 491 ILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
+L+ W + + YP+ +K L+ L+ +QV NWF N R+R
Sbjct: 199 LLREW---YLKDPYPNPPKKKELANATGLTQMQVGNWFKNRRQR 239
>U55856-2|AAA98021.1| 197|Caenorhabditis elegans Touch abnormal
protein 1 protein.
Length = 197
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 452 RKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
RK R + ++ L+R RY + P E+I L+ NLS QV WF N R +
Sbjct: 121 RKARTVFSDQQLQGLERRFESQRYLSTP---ERIELANALNLSETQVKTWFQNRRMK 174
>AF026206-1|AAK39306.1| 260|Caenorhabditis elegans Hypothetical
protein T28B4.2 protein.
Length = 260
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 206 DRTEMAFQHRRDVRELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDENESGTDGEADR 385
+ + + ++ R R+L +EI RD + ++ QQS+ R R DEN D DR
Sbjct: 193 EESHKSIKYARRQRKLNKEIDRDKKESS-QQSTGHSSRKRESRVQIDDENMQHVDLVTDR 251
Query: 386 S 388
S
Sbjct: 252 S 252
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 527 AYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
AYP D + ALS++ LS + WF NAR++
Sbjct: 1062 AYPKDDDLEALSKKLQLSPRVIVVWFQNARQK 1093
>Z11795-1|CAA77838.1| 130|Caenorhabditis elegans pceh16-1 protein
protein.
Length = 130
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 479 HSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
+S + L R + + + Y S ++I LSQ NL+ Q+ WF N R +
Sbjct: 32 YSARQLDRLETEFQTDKYLSVNKRIQLSQTLNLTETQIKTWFQNRRTK 79
>U40933-7|AAA81676.4| 122|Caenorhabditis elegans C.elegans homeobox
protein 19,isoform a protein.
Length = 122
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 479 HSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
+S + L R + + + Y S ++I LSQ NL+ Q+ WF N R +
Sbjct: 24 YSARQLDRLETEFQTDKYLSVNKRIQLSQTLNLTETQIKTWFQNRRTK 71
>U40933-6|AAQ23123.1| 199|Caenorhabditis elegans C.elegans homeobox
protein 19,isoform b protein.
Length = 199
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 479 HSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
+S + L R + + + Y S ++I LSQ NL+ Q+ WF N R +
Sbjct: 101 YSARQLDRLETEFQTDKYLSVNKRIQLSQTLNLTETQIKTWFQNRRTK 148
>Z82279-3|CAD62039.1| 106|Caenorhabditis elegans Hypothetical
protein R03C1.3b protein.
Length = 106
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 422 MQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNW 601
+ P + ++ R H + L+R +Y A A++ L+QE N+S QV W
Sbjct: 10 LSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLA---GADRAQLAQELNMSESQVKVW 66
Query: 602 FINARRR 622
F N R +
Sbjct: 67 FQNRRTK 73
>Z82279-2|CAB05260.2| 256|Caenorhabditis elegans Hypothetical
protein R03C1.3a protein.
Length = 256
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 422 MQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNW 601
+ P + ++ R H + L+R +Y A A++ L+QE N+S QV W
Sbjct: 160 LSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLA---GADRAQLAQELNMSESQVKVW 216
Query: 602 FINARRR 622
F N R +
Sbjct: 217 FQNRRTK 223
>Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical
protein T05G5.9a protein.
Length = 660
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/95 (24%), Positives = 42/95 (44%)
Frame = +2
Query: 68 VLSNVILCTEKI*QLWSVVQNQNKVFAWIE*STMLPPTAGLSQEQRDRTEMAFQHRRDVR 247
V +N CTE + + ++++ + +VF W E +T +S E RD Q R +R
Sbjct: 89 VENNPTECTECLSKSGALIELEKEVFEWKEKATRADM---ISLELRDLESKVDQLNRALR 145
Query: 248 ELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDE 352
+ T +I+ V ++ +T S+ E
Sbjct: 146 DKTEALIKAQEVITENDLEVNNMKKEKNNTKSSIE 180
>Z11794-1|CAA77837.1| 66|Caenorhabditis elegans ceh16-1 protein
protein.
Length = 66
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 479 HSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINAR 616
+S + L R + + + Y S ++I LSQ NL+ Q+ WF N R
Sbjct: 21 YSARQLDRLETEFQTDKYLSVNKRIQLSQTLNLTETQIKTWFQNRR 66
>AY151210-1|AAN72827.1| 106|Caenorhabditis elegans COG-1B protein.
Length = 106
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 422 MQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNW 601
+ P + ++ R H + L+R +Y A A++ L+QE N+S QV W
Sbjct: 10 LSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLA---GADRAQLAQELNMSESQVKVW 66
Query: 602 FINARRR 622
F N R +
Sbjct: 67 FQNRRTK 73
>AY151209-1|AAN72826.1| 256|Caenorhabditis elegans COG-1A protein.
Length = 256
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 422 MQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNW 601
+ P + ++ R H + L+R +Y A A++ L+QE N+S QV W
Sbjct: 160 LSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLA---GADRAQLAQELNMSESQVKVW 216
Query: 602 FINARRR 622
F N R +
Sbjct: 217 FQNRRTK 223
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 188 LSQEQRDRTEMAFQ--HRRDVRELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDENES 361
LS+ QR + +Q + R ++ ++ R N Q SS+PG + P +S ++EN
Sbjct: 980 LSRPQRPGSNQGYQMNNNRGFNGNNQQQHQNRRSFNNQSSSNPGNGSTGPRSSRSNEN-- 1037
Query: 362 GTDGEADRSRRQTILHGVSGM 424
D SR+Q G SG+
Sbjct: 1038 ----VRDSSRQQNSQKGSSGV 1054
>AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform b protein.
Length = 871
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 188 LSQEQRDRTEMAFQ--HRRDVRELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDENES 361
LS+ QR + +Q + R ++ ++ R N Q SS+PG + P +S ++EN
Sbjct: 738 LSRPQRPGSNQGYQMNNNRGFNGNNQQQHQNRRSFNNQSSSNPGNGSTGPRSSRSNEN-- 795
Query: 362 GTDGEADRSRRQTILHGVSGM 424
D SR+Q G SG+
Sbjct: 796 ----VRDSSRQQNSQKGSSGV 812
>AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform d protein.
Length = 807
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 188 LSQEQRDRTEMAFQ--HRRDVRELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDENES 361
LS+ QR + +Q + R ++ ++ R N Q SS+PG + P +S ++EN
Sbjct: 674 LSRPQRPGSNQGYQMNNNRGFNGNNQQQHQNRRSFNNQSSSNPGNGSTGPRSSRSNEN-- 731
Query: 362 GTDGEADRSRRQTILHGVSGM 424
D SR+Q G SG+
Sbjct: 732 ----VRDSSRQQNSQKGSSGV 748
>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in germ
line developmentprotein 2, isoform c protein.
Length = 1036
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 188 LSQEQRDRTEMAFQ--HRRDVRELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDENES 361
LS+ QR + +Q + R ++ ++ R N Q SS+PG + P +S ++EN
Sbjct: 903 LSRPQRPGSNQGYQMNNNRGFNGNNQQQHQNRRSFNNQSSSNPGNGSTGPRSSRSNEN-- 960
Query: 362 GTDGEADRSRRQTILHGVSGM 424
D SR+Q G SG+
Sbjct: 961 ----VRDSSRQQNSQKGSSGV 977
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in germ
line developmentprotein 2, isoform a protein.
Length = 1113
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 188 LSQEQRDRTEMAFQ--HRRDVRELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDENES 361
LS+ QR + +Q + R ++ ++ R N Q SS+PG + P +S ++EN
Sbjct: 980 LSRPQRPGSNQGYQMNNNRGFNGNNQQQHQNRRSFNNQSSSNPGNGSTGPRSSRSNEN-- 1037
Query: 362 GTDGEADRSRRQTILHGVSGM 424
D SR+Q G SG+
Sbjct: 1038 ----VRDSSRQQNSQKGSSGV 1054
>Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical
protein T05G5.9b protein.
Length = 658
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/93 (23%), Positives = 41/93 (44%)
Frame = +2
Query: 74 SNVILCTEKI*QLWSVVQNQNKVFAWIE*STMLPPTAGLSQEQRDRTEMAFQHRRDVREL 253
+N CTE + + ++++ + +VF W E +T +S E RD Q R +R+
Sbjct: 89 NNPTECTECLSKSGALIELEKEVFEWKEKATRADM---ISLELRDLESKVDQLNRALRDK 145
Query: 254 TREIIRDARVANRQQSSSPGVRNRFPSTSSTDE 352
T +I+ V ++ +T S+ E
Sbjct: 146 TEALIKAQEVITENDLEVNNMKKEKNNTKSSIE 178
>Z73898-9|CAA98066.2| 913|Caenorhabditis elegans Hypothetical
protein ZK822.1 protein.
Length = 913
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 452 RKRRGNLAKHSVKILKRWLYDHRYNAY 532
R RR K S+K +K DH YNAY
Sbjct: 692 RIRRNEETKRSIKFMKTNSIDHGYNAY 718
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 371 GEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKR 502
G+ D R + IL + + GQI+ +R NLA S++ ++R
Sbjct: 2431 GKGDSLRARAILRSLISLDDLGQILALRFTIPNLAAPSIEAVRR 2474
>AL032625-1|CAA21523.1| 326|Caenorhabditis elegans Hypothetical
protein Y37H9A.2 protein.
Length = 326
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +2
Query: 191 SQEQRDRTEMAFQHRRDVRELTREIIRDARVANRQQSSSPGV---RNRFPSTSSTD-ENE 358
S+ RD + ++ HRR R L R + RVA SSP V R+ S +D N+
Sbjct: 19 SEASRDSSSIS-PHRRSKRVLERNTLNSNRVAVPSSGSSPLVTFGRSLSKSQVGSDRHNK 77
Query: 359 SGTDGEADRSRRQTILHGVS 418
+G + ++ + +T G+S
Sbjct: 78 AGIETLDEKIQPRTRQRGIS 97
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +2
Query: 476 KHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMIRREGH 655
K+ + +L++W+ D+R Y + A ++ +L V + N + I E +R E
Sbjct: 1883 KNRIDVLEQWMNDYRETIYDVSKKDTADAERMSLVVGKRINRYKEVSNEI--EKLRVEAE 1940
Query: 656 DPLHYT 673
D + Y+
Sbjct: 1941 DQIAYS 1946
>Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 518 RYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEM 637
R + YP + ++S+E LS ++ WF N R R M
Sbjct: 207 RADTYPHANARESISKETGLSEEKIMTWFSNRRARCRKNM 246
>Z48582-7|CAA88468.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 518 RYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEM 637
R + YP + ++S+E LS ++ WF N R R M
Sbjct: 207 RADTYPHANARESISKETGLSEEKIMTWFSNRRARCRKNM 246
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +2
Query: 476 KHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMIRREGH 655
K+ + +L++W+ D+R Y + A ++ +L V + N + I E +R E
Sbjct: 1883 KNRIDVLEQWMNDYRETIYDVSKKDTADAERMSLVVGKRINRYKEVSNEI--EKLRVEAE 1940
Query: 656 DPLHYT 673
D + Y+
Sbjct: 1941 DQIAYS 1946
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +2
Query: 476 KHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMIRREGH 655
K+ + +L++W+ D+R Y + A ++ +L V + N + I E +R E
Sbjct: 1883 KNRIDVLEQWMNDYRETIYDVSKKDTADAERMSLVVGKRINRYKEVSNEI--EKLRVEAE 1940
Query: 656 DPLHYT 673
D + Y+
Sbjct: 1941 DQIAYS 1946
>AF039720-2|AAB96698.1| 180|Caenorhabditis elegans C.elegans
homeobox protein 12 protein.
Length = 180
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +2
Query: 401 ILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLS 580
+ + V+ Q G++ R+ R + + L++ D+RY + P + L+Q+ +LS
Sbjct: 97 LTYSVNAWQAWGKM---RRPRTAFSSEQLVQLEKQFSDNRYLSRP---RRYQLAQQLSLS 150
Query: 581 VLQVCNWFINARRR 622
Q+ WF N R +
Sbjct: 151 ETQIKIWFQNRRMK 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,443,391
Number of Sequences: 27780
Number of extensions: 345921
Number of successful extensions: 1140
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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