Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0748
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75410.1 68414.m08760 BEL1-like homeodomain 3 protein (BLH3) ... 69 3e-12
At1g19700.1 68414.m02457 homeobox-leucine zipper family protein ... 68 5e-12
At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4) 67 1e-11
At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4) 67 1e-11
At2g27990.1 68415.m03392 homeodomain-containing protein 66 2e-11
At2g16400.1 68415.m01877 homeodomain-containing protein 66 3e-11
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2) 64 7e-11
At4g34610.1 68417.m04916 homeodomain-containing protein similari... 64 7e-11
At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) severa... 64 1e-10
At2g27220.1 68415.m03271 homeodomain-containing protein 60 1e-09
At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to... 60 2e-09
At2g35940.2 68415.m04412 homeodomain-containing protein contains... 59 3e-09
At2g35940.1 68415.m04411 homeodomain-containing protein contains... 59 3e-09
At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT... 56 2e-08
At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to SW... 56 3e-08
At1g75430.1 68414.m08762 homeodomain-containing protein contains... 54 7e-08
At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (ST... 54 1e-07
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT... 53 2e-07
At5g11060.1 68418.m01292 homeobox protein knotted-1 like 4 (KNAT... 53 2e-07
At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT... 52 3e-07
At1g70510.1 68414.m08115 homeobox protein knotted-1 like 2 (KNAT... 50 1e-06
At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7... 50 1e-06
At1g23380.2 68414.m02924 homeobox transcription factor (KNAT6) n... 47 1e-05
At1g23380.1 68414.m02925 homeobox transcription factor (KNAT6) n... 47 1e-05
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode... 36 0.035
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 35 0.061
At4g17710.1 68417.m02645 homeobox-leucine zipper family protein ... 33 0.25
At3g61150.1 68416.m06843 homeobox-leucine zipper family protein ... 32 0.43
At1g05230.2 68414.m00529 homeobox-leucine zipper family protein ... 31 0.57
At1g05230.1 68414.m00528 homeobox-leucine zipper family protein ... 31 0.57
At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule... 31 0.75
At3g60030.1 68416.m06704 squamosa promoter-binding protein-like ... 30 1.3
At1g03920.1 68414.m00377 protein kinase, putative contains prote... 30 1.3
At5g46880.1 68418.m05777 homeobox-leucine zipper family protein ... 30 1.7
At4g33530.1 68417.m04765 potassium transporter family protein si... 29 3.0
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 28 5.3
At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot... 28 5.3
At1g06160.1 68414.m00647 ethylene-responsive factor, putative si... 28 5.3
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ... 28 7.0
At1g28420.1 68414.m03494 homeobox transcription factor, putative... 28 7.0
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 27 9.3
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 27 9.3
At1g24140.1 68414.m03045 matrixin family protein similar to matr... 27 9.3
>At1g75410.1 68414.m08760 BEL1-like homeodomain 3 protein (BLH3)
identical to BEL1-like homeodomain 3 (GI:13877515)
[Arabidopsis thaliana]
Length = 524
Score = 68.9 bits (161), Expect = 3e-12
Identities = 49/138 (35%), Positives = 71/138 (51%)
Frame = +2
Query: 227 QHRRDVRELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDENESGTDGEADRSRRQTIL 406
+H R +R+ +E I+ R ++ +S R P D+ R R+Q L
Sbjct: 287 RHFRCLRDAIKEQIQVIRGKLGERETSDEQGERIPRLRYLDQ----------RLRQQRAL 336
Query: 407 HGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVL 586
H GM R +RG L ++SV IL+ WL++H + YP ++EKI LS++ LS
Sbjct: 337 HQQLGMVRPAW----RPQRG-LPENSVSILRAWLFEHFLHPYPKESEKIMLSKQTGLSKN 391
Query: 587 QVCNWFINARRRILPEMI 640
QV NWFINAR R+ MI
Sbjct: 392 QVANWFINARVRLWKPMI 409
>At1g19700.1 68414.m02457 homeobox-leucine zipper family protein
similar to BEL1-like homeodomain 1 (GI:13877517)
[Arabidopsis thaliana]; similar to homeodomain protein
GI:7239157 from (Malus domestica); contains weak hit to
Pfam profile PF00046: Homeobox domain
Length = 538
Score = 68.1 bits (159), Expect = 5e-12
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Frame = +2
Query: 383 RSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALS 562
R R+Q LH GM R +RG L ++SV +L+ WL++H + YP ++EKI L+
Sbjct: 334 RLRQQRALHQQLGMVRPAW----RPQRG-LPENSVSVLRAWLFEHFLHPYPKESEKIMLA 388
Query: 563 QEANLSVLQVCNWFINARRRI----LPEMIRREGHDPLHYTISRRGRKQPS 703
++ LS QV NWFINAR R+ + EM + E D IS+ ++ S
Sbjct: 389 KQTGLSKNQVANWFINARVRLWKPMIEEMYKEEFGDESELLISKSSQEPNS 439
>At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4)
Length = 627
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/84 (42%), Positives = 51/84 (60%)
Frame = +2
Query: 389 RRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQE 568
R+Q H + M+ + R +RG L + SV IL+ WL++H N YPSDA+K L+++
Sbjct: 409 RQQRAFHHMGMMEQEAW----RPQRG-LPERSVNILRAWLFEHFLNPYPSDADKHLLARQ 463
Query: 569 ANLSVLQVCNWFINARRRILPEMI 640
LS QV NWFINAR R+ M+
Sbjct: 464 TGLSRNQVSNWFINARVRLWKPMV 487
>At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4)
Length = 627
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/84 (42%), Positives = 51/84 (60%)
Frame = +2
Query: 389 RRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQE 568
R+Q H + M+ + R +RG L + SV IL+ WL++H N YPSDA+K L+++
Sbjct: 409 RQQRAFHHMGMMEQEAW----RPQRG-LPERSVNILRAWLFEHFLNPYPSDADKHLLARQ 463
Query: 569 ANLSVLQVCNWFINARRRILPEMI 640
LS QV NWFINAR R+ M+
Sbjct: 464 TGLSRNQVSNWFINARVRLWKPMV 487
>At2g27990.1 68415.m03392 homeodomain-containing protein
Length = 584
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/99 (33%), Positives = 59/99 (59%)
Frame = +2
Query: 344 TDENESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRY 523
+ + +G + + R+++++ G + Q Q + R +RG L + +V +L+ WL+DH
Sbjct: 391 SSHSSNGNNNNRFQKRQRSLIGNNVGFESQQQHIW-RPQRG-LPERAVAVLRAWLFDHFL 448
Query: 524 NAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMI 640
+ YP+D++K L+ + LS QV NWFINAR R+ M+
Sbjct: 449 HPYPTDSDKQMLATQTGLSRNQVSNWFINARVRLWKPMV 487
>At2g16400.1 68415.m01877 homeodomain-containing protein
Length = 482
Score = 65.7 bits (153), Expect = 3e-11
Identities = 36/84 (42%), Positives = 51/84 (60%)
Frame = +2
Query: 389 RRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQE 568
R+Q L + MQP T R +RG L SV +L+ WL++H + YP D++KI L+++
Sbjct: 270 RQQRALQRLGVMQPH----TWRPQRG-LPDSSVLVLRAWLFEHFLHPYPKDSDKIMLARQ 324
Query: 569 ANLSVLQVCNWFINARRRILPEMI 640
LS QV NWFINAR R+ M+
Sbjct: 325 TGLSRGQVSNWFINARVRLWKPMV 348
>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
Length = 638
Score = 64.5 bits (150), Expect = 7e-11
Identities = 39/103 (37%), Positives = 58/103 (56%)
Frame = +2
Query: 332 STSSTDENESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLY 511
S+S + E+ ++S RQ GM+ + R +RG L + SV IL+ WL+
Sbjct: 463 SSSGLTKGETPRLRLLEQSLRQNRAFHQMGMEQEAW----RPQRG-LPERSVNILRAWLF 517
Query: 512 DHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMI 640
+H + YPSDA+K L+++ LS QV NWFINAR R+ M+
Sbjct: 518 EHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 560
>At4g34610.1 68417.m04916 homeodomain-containing protein similaritry
to homeotic protein BEL1, Arabidopsis thaliana,
PIR2:A57632
Length = 532
Score = 64.5 bits (150), Expect = 7e-11
Identities = 34/73 (46%), Positives = 48/73 (65%)
Frame = +2
Query: 422 MQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNW 601
MQPQ R +RG L ++SV IL+ WL++H + YP D++KI L+++ LS QV NW
Sbjct: 310 MQPQAW----RPQRG-LPENSVLILRAWLFEHFLHPYPKDSDKIMLARQTGLSRGQVSNW 364
Query: 602 FINARRRILPEMI 640
FINAR R+ M+
Sbjct: 365 FINARVRLWKPMV 377
>At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) several
homeodomain proteins;
Length = 575
Score = 63.7 bits (148), Expect = 1e-10
Identities = 39/124 (31%), Positives = 65/124 (52%)
Frame = +2
Query: 338 SSTDENESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDH 517
+S ++ +S G +D SR G P R RG L + +V +L+ WL+DH
Sbjct: 313 NSENKTDSLRFGGSDSSRGLCSAGQRHGF-PDHHAPVWRPHRG-LPERAVTVLRAWLFDH 370
Query: 518 RYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMIRREGHDPLHYTISRRGRKQ 697
+ YP+D +K+ L+++ LS QV NWFINAR R+ M+ + +H +R+ ++
Sbjct: 371 FLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRVWKPMV-----EEIHMLETRQSQRS 425
Query: 698 PSGA 709
S +
Sbjct: 426 SSSS 429
>At2g27220.1 68415.m03271 homeodomain-containing protein
Length = 431
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/79 (35%), Positives = 47/79 (59%)
Frame = +2
Query: 452 RKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILP 631
R +RG L + V +L+ WL++H + YP D +K+ L+++ L+ QV NWFINAR R+
Sbjct: 230 RPQRG-LPEKVVSVLRSWLFEHFLHPYPRDLDKVMLAKQTGLTKSQVSNWFINARVRMWK 288
Query: 632 EMIRREGHDPLHYTISRRG 688
++ + + SR+G
Sbjct: 289 PLVEELYSEEMDIEESRKG 307
>At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to
cDNA homeobox protein (BEL1) GI:28202124
Length = 611
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2
Query: 452 RKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILP 631
R +RG L + +V L+ WL++H + YPSD +K L+++ LS QV NWFINAR R+
Sbjct: 393 RPQRG-LPERAVTTLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 451
Query: 632 EMI 640
MI
Sbjct: 452 PMI 454
>At2g35940.2 68415.m04412 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 680
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/63 (41%), Positives = 42/63 (66%)
Frame = +2
Query: 452 RKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILP 631
R +RG L + +V +L+ WL++H + YP D++K L+++ L+ QV NWFINAR R+
Sbjct: 387 RPQRG-LPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWK 445
Query: 632 EMI 640
M+
Sbjct: 446 PMV 448
>At2g35940.1 68415.m04411 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 680
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/63 (41%), Positives = 42/63 (66%)
Frame = +2
Query: 452 RKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILP 631
R +RG L + +V +L+ WL++H + YP D++K L+++ L+ QV NWFINAR R+
Sbjct: 387 RPQRG-LPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWK 445
Query: 632 EMI 640
M+
Sbjct: 446 PMV 448
>At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT1)
identical to homeobox protein knotted-1 like 1 (KNAT1)
SP:P46639 from [Arabidopsis thaliana]
Length = 398
Score = 56.4 bits (130), Expect = 2e-08
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Frame = +2
Query: 311 GVRNRFPSTSSTDENESGTDGEA--------DRSRRQTILHGVSG-MQPQGQIVTIRKRR 463
G + S+ EN SG + E DR + +L SG + Q ++ +K++
Sbjct: 246 GKSDNMGSSDEEQENNSGGETELPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKK 305
Query: 464 GNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
G L K + + L W H YPS++EK+AL++ L Q+ NWFIN R+R
Sbjct: 306 GKLPKEARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKR 358
>At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to
SWISS-PROT:P48731 homeobox protein ATH1. [Arabidopsis
thaliana]
Length = 473
Score = 55.6 bits (128), Expect = 3e-08
Identities = 31/85 (36%), Positives = 48/85 (56%)
Frame = +2
Query: 452 RKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILP 631
R +RG L + SV +L+ W++ + + YP D+EK L+ + L+ QV NWFINAR R+
Sbjct: 374 RPQRG-LPEKSVSVLRNWMFQNFLHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVRLWK 432
Query: 632 EMIRREGHDPLHYTISRRGRKQPSG 706
MI E + ++ QP+G
Sbjct: 433 PMI-EEMYAEMNKRKLNNSHIQPNG 456
>At1g75430.1 68414.m08762 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 297
Score = 54.4 bits (125), Expect = 7e-08
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 11/82 (13%)
Frame = +2
Query: 470 LAKHSVKILKRWLYDHRYNA-------YPSDAEKIALSQEANLSVLQVCNWFINARRRI- 625
L + SV IL+ WL+ H + YP++AEK+ L+ + LS QV NWFINAR R+
Sbjct: 209 LPETSVAILRAWLFQHFLHPSVFLLLNYPNEAEKLVLASQTGLSKNQVSNWFINARVRLW 268
Query: 626 ---LPEMIRREGHDPLHYTISR 682
+ EM R E D L ++ R
Sbjct: 269 KPMIEEMYREEFGDSLDESMQR 290
>At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (STM)
identical to homeobox protein SHOOT MERISTEMLESS (STM)
SP:Q38874 from [Arabidopsis thaliana]
Length = 382
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Frame = +2
Query: 320 NRFPSTSSTDENESGTDGEA-DRSRRQTILHGVSGMQPQGQIVTIRKRR-GNLAKHSVKI 493
N S D N D +A DR + +L SG + ++KR+ G L K + +
Sbjct: 239 NNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQ 298
Query: 494 LKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
L W H YPS+ +K+AL++ L Q+ NWFIN R+R
Sbjct: 299 LLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKR 341
>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
identical to homeobox protein knotted-1 like 3 (KNAT3)
SP:P48000 from [Arabidopsis thaliana]
Length = 431
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 449 IRKRR-GNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
+RKRR G L + +LK W H YP++ +K L QE L + Q+ NWFIN R+R
Sbjct: 343 LRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 401
>At5g11060.1 68418.m01292 homeobox protein knotted-1 like 4 (KNAT4)
identical to homeobox protein knotted-1 like 4 ( KNAT4)
SP:P48001 from [Arabidopsis thaliana]
Length = 393
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 449 IRKRR-GNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
+RKRR G L + +LK W H YP++ +K L QE L + Q+ NWFIN R+R
Sbjct: 307 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 365
>At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT5)
/ homeodomain containing protein 1 (H1) identical to
homeobox protein knotted-1 like 5 (KNAT5) SP:P48002 from
[Arabidopsis thaliana]
Length = 383
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 449 IRKRR-GNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
+RKRR G L + +LK W H YP++ +K L QE L + Q+ NWFIN R+R
Sbjct: 302 MRKRRAGKLPGDTTSVLKEWWRTHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 360
>At1g70510.1 68414.m08115 homeobox protein knotted-1 like 2 (KNAT2)
(K1) identical to homeobox protein knotted-1 like 2 (
KNAT2/ ATK1) SP: from [Arabidopsis thaliana]
Length = 310
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +2
Query: 452 RKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
+K++G L + + + L W H YP++ +KI+L++E L Q+ NWFIN R+R
Sbjct: 231 KKKKGKLPREARQALLDWWNVHNKWPYPTEGDKISLAEETGLDQKQINNWFINQRKR 287
>At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7)
contains Pfam profiles: PF03789 ELK domain, PF03790
KNOX1 domain, PF03791 KNOX2 domain; similar to homeobox
protein HD1 SP:P46606 from [Brassica napus]; identical
to cDNA homeodomain transcription factor KNAT7 (KNAT7)
GI:11878229
Length = 291
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 449 IRKRR-GNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
+RKRR G L + +LK W H YP++ +K L +E L + Q+ NWFIN R+R
Sbjct: 215 MRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 273
>At1g23380.2 68414.m02924 homeobox transcription factor (KNAT6)
nearly identical to homeodomain transcription factor
KNAT6 (KNAT6L) GI:15991302 [Arabidopsis thaliana],
homeodomain transcription factor KNAT6 (KNAT6S)
[Arabidopsis thaliana] GI:15991300
Length = 326
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 452 RKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
+K++G L + + + L W H YP++ +KIAL+ L Q+ NWFIN R+R
Sbjct: 246 KKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKR 302
>At1g23380.1 68414.m02925 homeobox transcription factor (KNAT6)
nearly identical to homeodomain transcription factor
KNAT6 (KNAT6L) GI:15991302 [Arabidopsis thaliana],
homeodomain transcription factor KNAT6 (KNAT6S)
[Arabidopsis thaliana] GI:15991300
Length = 327
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 452 RKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 622
+K++G L + + + L W H YP++ +KIAL+ L Q+ NWFIN R+R
Sbjct: 247 KKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKR 303
>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
protodermal factor 2 (PDF2) identical to GP|14276060|
protodermal factor2 (GI:14276060)
Length = 743
Score = 35.5 bits (78), Expect = 0.035
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Frame = +2
Query: 341 STDENESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYD-- 514
ST +N+ G G + V+ P G+ + +R N K + +R + +
Sbjct: 19 STSDNDLGITGSREDDFETKSGTEVTTENPSGEELQDPSQRPNKKKRYHRHTQRQIQELE 78
Query: 515 --HRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMIRRE 649
+ +P D ++ LS++ NL LQV WF N R ++ + R E
Sbjct: 79 SFFKECPHPDDKQRKELSRDLNLEPLQVKFWFQNKRTQMKAQSERHE 125
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 34.7 bits (76), Expect = 0.061
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +2
Query: 389 RRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQE 568
++ T+ G G I K + K + +R + N YP A K +L++E
Sbjct: 591 KKDTLEMPQEGPGENGGSGEIEKSSSSACKQTDPKTQRLYISFQENQYPDKATKESLAKE 650
Query: 569 ANLSVLQVCNWFINAR 616
++V QV NWF + R
Sbjct: 651 LQMTVKQVNNWFKHRR 666
>At4g17710.1 68417.m02645 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein (GI:8920425) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 709
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +2
Query: 476 KHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMIRRE 649
+H+ +++ + NA+P ++ LS++ LS +QV WF N R +I + R +
Sbjct: 94 RHTASQIQQMEALFKENAHPDTKTRLRLSKKLGLSPIQVKFWFQNKRTQIKAQQSRSD 151
>At3g61150.1 68416.m06843 homeobox-leucine zipper family protein /
homeodomain GLABRA2 like protein 1 (HD-GL2-1) similar to
Anthocyaninless2 (ANL2) (GP:5702094) Arabidopsis
thaliana, EMBL:AF077335
Length = 808
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +2
Query: 455 KRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPE 634
K++ +H+ K ++ + A+P + +++ LS+ NL QV WF N R ++ +
Sbjct: 109 KKKKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMKTQ 168
Query: 635 MIRRE 649
+ R E
Sbjct: 169 IERHE 173
>At1g05230.2 68414.m00529 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
homeobox 1 (GP:12002853) {Picea abies}; Strong
similarity to Phalaenopsis homeobox protein (gb|U34743)
Length = 721
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 530 YPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMIRRE 649
+P D ++ LS+E NL LQV WF N R ++ R E
Sbjct: 88 HPDDKQRKQLSRELNLEPLQVKFWFQNKRTQMKNHHERHE 127
>At1g05230.1 68414.m00528 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
homeobox 1 (GP:12002853) {Picea abies}; Strong
similarity to Phalaenopsis homeobox protein (gb|U34743)
Length = 721
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 530 YPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMIRRE 649
+P D ++ LS+E NL LQV WF N R ++ R E
Sbjct: 88 HPDDKQRKQLSRELNLEPLQVKFWFQNKRTQMKNHHERHE 127
>At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) /
ovule-specific homeobox protein A20 nearly identical to
meristem L1 layer homeobox protein A20 (AtML1)
[Arabidopsis thaliana] GI:1881536, protodermal factor2
(PDF2) [Arabidopsis thaliana] GI:14276060
Length = 762
Score = 31.1 bits (67), Expect = 0.75
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 326 FPSTSSTDENESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRW 505
F T EN+ G G + V+ P + + +R N K + +R
Sbjct: 14 FDMTPKNSENDLGITGSHEEDFETKSGAEVTMENPLEEELQDPNQRPNKKKRYHRHTQRQ 73
Query: 506 LYD----HRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMIRRE 649
+ + + +P D ++ LS+E +L LQV WF N R ++ + R E
Sbjct: 74 IQELESFFKECPHPDDKQRKELSRELSLEPLQVKFWFQNKRTQMKAQHERHE 125
>At3g60030.1 68416.m06704 squamosa promoter-binding protein-like 12
(SPL12) identical to squamosa promoter binding
protein-like 12 [Arabidopsis thaliana] GI:6006395;
contains Pfam profiles PF03110: SBP domain, PF00023:
Ankyrin repeat
Length = 927
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +2
Query: 296 QSSSPGVRNRFPSTSSTDENESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLA 475
+ SSP +R S S++D++ S + G+A +SR I+ + G +P V +R + N
Sbjct: 371 RQSSPPQTSRRNSDSASDQSPSSSSGDA-QSRTDRIVFKLFGKEPNDFPVALRGQILNWL 429
Query: 476 KHS 484
H+
Sbjct: 430 AHT 432
>At1g03920.1 68414.m00377 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 569
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +2
Query: 260 EIIRDARVANRQQSSSPGVRNRFPSTSSTDENESGTDGEADRSRRQTILHGVSGMQPQGQ 439
EI+ D +V + +++ PS S E+ES D + S +QTI S P+G
Sbjct: 502 EIVNDYQVPGIAELKKKESKSKRPSVKSLFESES--DSSSSGSEQQTINRSYSNPTPRGM 559
Query: 440 IVTIRK 457
+R+
Sbjct: 560 EPNLRR 565
>At5g46880.1 68418.m05777 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 820
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 524 NAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMIRRE 649
N +P D ++ LS E L QV WF N R ++ + R E
Sbjct: 133 NPHPDDKQRKRLSAELGLKPRQVKFWFQNRRTQMKAQQDRNE 174
>At4g33530.1 68417.m04765 potassium transporter family protein
similar to K+ transporter HAK5 [Arabidopsis thaliana]
GI:7108597; KUP/HAK/KT Transporter family member,
PMID:11500563; contains Pfam profile PF02705: K+
potassium transporter
Length = 855
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = -3
Query: 588 CKTLKLASWLSAIFSASLGYALYLWSYSHRFNIFTECLARFP 463
C ++ SW+ +F+ + +++W+Y + TE + P
Sbjct: 551 CSSVADGSWIILVFATIMFLIMFVWNYGSKLKYETEVQKKLP 592
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00575: S1 RNA binding domain
Length = 1168
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 218 MAFQHRRD-VRELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDENESGTDGEADRSR 391
+A + +D V+EL +EI R+A R++ RNR D ESG D + DR+R
Sbjct: 98 LAIKDTKDKVKELEKEIEREAEERRREED-----RNR-----DRDRRESGRDRDRDRNR 146
>At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein
similar to SP|P22138 DNA-directed RNA polymerase I 135
kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit
2) {Saccharomyces cerevisiae}; contains Pfam profiles
PF04563; RNA polymerase beta subunit, PF04560: RNA
polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2
domain 2, PF04565: RNA polymerase Rpb2 domain 3,
PF00562: RNA polymerase Rpb2 domain 6
Length = 1114
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 272 DARVANRQQSSSPGVRNRFPSTSSTDENESGTD 370
D ++ + Q SP VR + +T S DEN +GT+
Sbjct: 662 DQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTN 694
>At1g06160.1 68414.m00647 ethylene-responsive factor, putative
similar to ethylene response factor 1 GB:AAD03544
GI:4128208 from [Arabidopsis thaliana]
Length = 244
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 278 RVANRQQSSSPGVRNRFPSTSSTDENESGTDGEADRSRRQTIL 406
R +++SSS PS+SS+ + S + + RSR+Q+++
Sbjct: 174 RPRGKKKSSSSSTLTSSPSSSSSYSSSSSSSSLSSRSRKQSVV 216
>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 721
Score = 27.9 bits (59), Expect = 7.0
Identities = 24/110 (21%), Positives = 43/110 (39%)
Frame = +2
Query: 287 NRQQSSSPGVRNRFPSTSSTDENESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRG 466
N + + N T +T+ D + D + HG G+ Q +K++
Sbjct: 15 NNNDNENNNNNNNNGGTDNTNAGNDSGDQDFDSGNTSSGNHG-EGLG-NNQAPRHKKKKY 72
Query: 467 NLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINAR 616
N +H+ + R +P D ++ LS + L +Q+ WF N R
Sbjct: 73 N--RHTQLQISEMEAFFRECPHPDDKQRYDLSAQLGLDPVQIKFWFQNKR 120
>At1g28420.1 68414.m03494 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7 GI:19486
[Lycopersicon peruvianum]
Length = 1703
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 530 YPSDAEKIALSQEANLSVLQVCNWFINAR 616
YPS+A + LS++ +LS Q+ WF + R
Sbjct: 61 YPSEATRAELSEKLDLSDRQLQMWFCHRR 89
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 512 DHRYNA--YPSDAEKIALSQEANLSVLQVCNWFINAR 616
++ Y+A YPS+A + LS + NLS Q+ WF + R
Sbjct: 33 ENTYSAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRR 69
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -3
Query: 609 FINQLHTCKTLK-LAS---WLSAIFSASLGYALYLWS-YSHRF 496
FIN L TCK LK LA LS + ++ + WS YSHRF
Sbjct: 69 FINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKAHNWSEYSHRF 111
>At1g24140.1 68414.m03045 matrixin family protein similar to matrix
metalloproteinase [Cucumis sativus] GI:7159629; contains
InterPro accession IPR001818: Matrixin
Length = 384
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 233 RRDVRELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDENESGTDGEADRSR 391
RR V +LT + + + + G R+ PST D +SG G +D SR
Sbjct: 311 RRKV-DLTTDDVEGVQYLYGANPNFNGSRSPPPSTQQRDTGDSGAPGRSDGSR 362
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,612,113
Number of Sequences: 28952
Number of extensions: 324638
Number of successful extensions: 926
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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