Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0746
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   4.1  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   4.1  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   5.4  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    26   5.4  
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    25   7.1  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.1  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   9.4  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   9.4  

>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +1

Query: 334 KLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK----IVAHQAEEIAYPKYEYNYS 495
           K A ++  T    P P   ++AP+A   HS P         +++A ++ +P  E ++S
Sbjct: 119 KRATSSQETKRDRPLPNIRNSAPSATRSHSTPCVAPGYLRTSNEAADVVFPHEEAHFS 176


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 301 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAH 450
           PQT   ++P+  +A +TPV+  + P P T    P  ++   AP+    AH
Sbjct: 222 PQTTQDSSPILTMAPSTPVSVGSTP-PSTPSVLP--IAKQLAPMNVCKAH 268


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 199 GQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPPGDQLG 65
           GQ   ++ P+R N+H+GF + V  + +     +S+     G QLG
Sbjct: 781 GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA----GKQLG 821


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 145 RHGVRCSGRKLPQQMSSGPVPPGD 74
           R+ + CSGRKL +Q  +G    GD
Sbjct: 59  RNEITCSGRKLYRQKGTGHARVGD 82


>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 626 CASPVYSTVLMEPSASWKEYEPFT 555
           C SP Y+T  M      KE+EP+T
Sbjct: 198 CVSPGYTTSDMTGGKFHKEWEPYT 221


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 478 YEYNYSV---ADGHSGDNKSQQEVRDGDAVKGSYS 573
           +++N+S    +DGHS D   QQ +   D+V   +S
Sbjct: 104 FDFNFSCYFGSDGHSNDTLCQQYIDVADSVGEQFS 138


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 18  QNVFQINSTVRICGVVPSWSPGG 86
           QN+F+I   ++I G+  S+SP G
Sbjct: 276 QNIFEIFEILKILGIPASFSPIG 298


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +1

Query: 508 HSGDNKSQQEVRDGDAVKGSYSFHEADGSIRTVEYTGDAHNGF 636
           H   N ++Q V + +           DG    +  T D HNGF
Sbjct: 17  HVSQNIAKQVVNNENVFMKLVMTRMLDGKTEVIPLTTDVHNGF 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.125    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,392
Number of Sequences: 5004
Number of extensions: 35039
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)