Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0746
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1)                    32   0.46 
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_17699| Best HMM Match : CsbD (HMM E-Value=0.014)                    30   1.9  
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)                29   4.3  
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)           29   4.3  
SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7)                      28   5.7  
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)                  28   7.5  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 27   9.9  
SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068)                27   9.9  

>SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1)
          Length = 159

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
 Frame = +1

Query: 262 ESVSSQNIIRHDQPQTINYAA-PVAKLAVATP--VTYHAAPAPVTYHAAPAAVSYHSAPV 432
           + V+  ++  +  P  + Y   P       TP  VTY+  P  VTY      V+Y   P 
Sbjct: 33  DCVTPYHVTYYVTPYHVTYCVTPYHVTYCVTPYHVTYYVTPYHVTYSVTLYHVTYCVTPY 92

Query: 433 AKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDAVK 561
           A    H+ +EI   K +   +  DG        QE +D    K
Sbjct: 93  ATAATHKKKEI---KQDGVQAEQDGGQAKQDGGQEKQDSGQEK 132


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 559  KGSYSFHEADGSIRTVEYTGDAHNGF 636
            KGSY  H+ DG  RT+EY      G+
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGY 1767


>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1386

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -2

Query: 268 RTQQTNSGLEQ-HGTLQGQHGKPQGQRGKLQE 176
           + +QT+  +EQ HG ++  HGK +  RGK+++
Sbjct: 751 KIEQTHGKIEQTHGKIEQTHGKIEQTRGKIEQ 782



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 268 RTQQTNSGLEQ-HGTLQGQHGKPQGQRGKLQE 176
           + +QT   +EQ HG ++  HGK +   GK+++
Sbjct: 786 KIEQTRGKIEQTHGKIEQTHGKIEQTHGKIEQ 817


>SB_17699| Best HMM Match : CsbD (HMM E-Value=0.014)
          Length = 178

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -2

Query: 268 RTQQTNSGLEQ-HGTLQGQHGKPQGQRGKLQE 176
           + +QT+  +EQ HG ++  HGK +  RGK+++
Sbjct: 81  KIEQTHGKIEQTHGKIEQTHGKIEQTRGKIEQ 112



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 268 RTQQTNSGLEQ-HGTLQGQHGKPQGQRGKLQE 176
           + +QT   +EQ HG ++  HGK +   GK+++
Sbjct: 116 KIEQTRGKIEQTHGKIEQTHGKIEQTHGKIEQ 147


>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 94  GPVPPGDQLGTTPQMRT 44
           G VPPGD++G TP  RT
Sbjct: 212 GGVPPGDEVGITPMYRT 228


>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
          Length = 156

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 319 AAPVAKLA-VATPVTYHAAPA-PVTYHAAPAAVSYHSAPVA 435
           AAP A++   A  VT  AAPA PVT  AAPA    H    A
Sbjct: 90  AAPAARVTPTAARVTPTAAPAAPVTPTAAPAPAQSHEEVAA 130


>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
          Length = 404

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 319 AAPVAKLA-VATPVTYHAAPA-PVTYHAAPAAVSYHSAPVA 435
           AAP A++   A  VT  AAPA PVT  AAPA    H    A
Sbjct: 247 AAPAARVTPTAARVTPTAAPAAPVTPTAAPAPAQSHEEVAA 287


>SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7)
          Length = 293

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = +1

Query: 301 PQTINYAAPVAKLAVATP---VTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAY 471
           P  I    P + + V  P   + YHAA      HA     ++H+A   K+    A  I Y
Sbjct: 168 PSLITVTLPPSNITVTLPPSFINYHAATTQYDRHATTKLYNHHAA--TKLYNRHAATILY 225

Query: 472 PKY 480
            ++
Sbjct: 226 NRH 228


>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
          Length = 941

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
 Frame = -2

Query: 244 LEQHGTLQGQHG-----KPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPP 80
           +   G  Q +HG     K QG  G+    Q  +E    RH ++ S     ++MS    P 
Sbjct: 640 ISSQGMQQSEHGIFGSRKRQGNGGQPSSDQLPSEINIARHAIKISEESEKRKMSEERGPS 699

Query: 79  GDQL 68
           GD L
Sbjct: 700 GDGL 703


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 571 SMSPSLRHRRGLLVGTCCRRSDRQLLSSCT 482
           SM PS R    L  G C  R    LL+SCT
Sbjct: 578 SMLPSTRTTSVLYCGYCLSRDQHWLLTSCT 607


>SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068)
          Length = 919

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 505 GHSGDNKSQQEVRDGDAVKGSYSF 576
           G SGD  +++E  D DA +  YSF
Sbjct: 853 GASGDKVAEEEGEDDDAAEAEYSF 876


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.125    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,286,008
Number of Sequences: 59808
Number of extensions: 291194
Number of successful extensions: 943
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)