Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0746
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 32 0.38
At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate reductoi... 31 0.50
At4g25900.1 68417.m03724 aldose 1-epimerase family protein simil... 30 1.5
At3g12410.1 68416.m01546 hypothetical protein 29 2.0
At2g34330.1 68415.m04202 expressed protein 29 2.7
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 29 3.5
At1g69890.1 68414.m08043 expressed protein contains Pfam profil... 29 3.5
At3g12440.1 68416.m01549 extensin family protein contains simila... 28 4.7
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote... 28 4.7
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 28 4.7
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 28 4.7
At1g27430.1 68414.m03343 GYF domain-containing protein contains ... 28 4.7
At1g53730.1 68414.m06114 leucine-rich repeat transmembrane prote... 28 6.1
At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger) fa... 27 8.1
At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domai... 27 8.1
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 319 AAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAP 429
+AP + PV +H+ P P+ +H+ P V + S P
Sbjct: 697 SAPCEESPPPAPVVHHSPPPPMVHHSPPPPVIHQSPP 733
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +1
Query: 322 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 444
APV + P+ +H+ P PV + + P + P+ ++
Sbjct: 707 APVVHHSPPPPMVHHSPPPPVIHQSPPPPSPEYEGPLPPVI 747
>At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate
reductoisomerase (DXR) nearly identical to
1-deoxy-d-xylulose-5-phosphate reductoisomerase
[Arabidopsis thaliana] GI:4886307; contains Pfam profile
PF02670: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
Length = 477
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 172 QRHNEHRGFRHGVRCSGRKLPQQMSSGPVPPGDQLGTTPQ 53
+R N+ RGF GV+CS K+ QQ P PG + P+
Sbjct: 36 RRRNQGRGFGKGVKCS-VKVQQQQQPPPAWPGRAVPEAPR 74
>At4g25900.1 68417.m03724 aldose 1-epimerase family protein similar
to apospory-associated protein C; APOC [Chlamydomonas
reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
1-epimerase
Length = 318
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 400 PAAVSYHSAPVAKIVAHQAEEIA-YP-KYEYNYSVADGHSGDNKSQQEVRDGDAVKGSYS 573
P S +A V IV E++ +P K+EY VA GH GD V++ D +++
Sbjct: 123 PPLPSLSTAHVDLIVRSSNEDLKIWPHKFEYRLRVALGHDGDLTLTSRVKNTDTKPFNFT 182
Query: 574 F 576
F
Sbjct: 183 F 183
>At3g12410.1 68416.m01546 hypothetical protein
Length = 230
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 349 TPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 444
TP +Y++ P P Y+A P + Y+S A I+
Sbjct: 65 TPFSYYSDPRPNNYYADPPPIRYYSDNPADIL 96
>At2g34330.1 68415.m04202 expressed protein
Length = 143
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 196 QRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPP 80
++ K ++ +R NE R F H V +K P+Q SS V P
Sbjct: 68 KKQKKEKMKRLNELRSFSHAVNDQKKKAPKQESSKKVFP 106
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 524 SPNKKSATVTQ*RAHT---PSTKLTAPSEPLSTPVMHTTAST 640
+PN ++AT T+ + T P + TAP EP++T T +T
Sbjct: 1254 TPNTETATSTENTSQTTTTPESVTTAPPEPITTAPPETVTTT 1295
>At1g69890.1 68414.m08043 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 279
Score = 28.7 bits (61), Expect = 3.5
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Frame = +1
Query: 277 QNIIRHDQPQTIN---YAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVA 447
+N + HD ++ + V ++ V T T APAPVT SY +PV++ +
Sbjct: 123 RNSVTHDTSHVLDSFLWDVDVVEILVGT-TTPAPAPAPVTTPPPHRRPSYTYSPVSRTSS 181
Query: 448 HQAEE---IAYPKYE---YNYSVAD--GH 510
++EE + PK E Y +AD GH
Sbjct: 182 EKSEEELTVPPPKSEGRPIYYHIADEEGH 210
>At3g12440.1 68416.m01549 extensin family protein contains
similarity to Swiss-Prot:Q38913 extensin 1 precursor
(AtExt1) (AtExt4) [Arabidopsis thaliana]
Length = 353
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 349 TPVTYHAAPAPVTYHAAPAAVSYHS 423
+PV+YH+ +PVT+H V Y S
Sbjct: 73 SPVSYHSDSSPVTHHYDSPPVCYRS 97
>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
kinase, putative similar to brassinosteroid insensitive
protein
Length = 1143
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 53 LWRCPKLVSWRNRSTTHLLGQFPPR 127
L +C LV W + +T HL G+ PPR
Sbjct: 515 LGKCTTLV-WLDLNTNHLTGEIPPR 538
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = +1
Query: 286 IRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK 438
++H P + + P + P Y + P PV Y++ P PV K
Sbjct: 50 VKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPVYK 100
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = +1
Query: 286 IRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK 438
++H P + + P + P Y + P PV Y++ P PV K
Sbjct: 50 VKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPVYK 100
>At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam
profile: PF02213 GYF domain
Length = 1531
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 238 QHGTLQGQHGKPQGQRGKLQ-EPQRHNEHR 152
Q+G Q Q+G+ Q Q G+LQ EP R E++
Sbjct: 926 QYGQKQSQYGQMQSQHGQLQSEPIRSLEYQ 955
>At1g53730.1 68414.m06114 leucine-rich repeat transmembrane protein
kinase, putative similar to GI:3360289 from [Zea mays]
(Plant Mol. Biol. 37 (5), 749-761 (1998))
Length = 719
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 283 CSGKRRTQQTNSGLEQHGTLQG 218
CSG R TQ SGLE GTL G
Sbjct: 68 CSGSRVTQIKLSGLELSGTLGG 89
>At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 381
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 241 EQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 137
E H L QG +G+L PQ + RGFR G
Sbjct: 256 EIHDQLVNSSLGKQGSKGQLALPQERSSVRGFRTG 290
>At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 624
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 412 SYHSAPVAKIVAHQAEEIAYPKYEYNYS 495
SY +AP +V+H A +IA+ + Y YS
Sbjct: 78 SYTTAPARNVVSHHA-QIAWRRLHYKYS 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.125 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,200,125
Number of Sequences: 28952
Number of extensions: 196875
Number of successful extensions: 646
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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