Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0744
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    31   0.21 
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   4.5  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   7.8  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   7.8  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   7.8  

>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = -2

Query: 562 EPIDIYNLN--APPAVDISS--KVSSIVTTAAPPFKPKRITASRQ 440
           EP+ + N +  +PP VD  S  K SSI+  + PPF+ + IT S +
Sbjct: 600 EPVSLENQSHISPPQVDSQSEYKESSILAPSNPPFETESITDSTE 644


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 420 YHHPAYFCREAVMRFGLKGGAAVVTILETLELISTAG 530
           +  P+ F  E V+   L GG AVV +  TLE I  +G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 313 LLGLTTLFWYSNSKYLLSNILVFIGGMTSCES 408
           LLGL  L ++ ++KY+L +IL+ +    S  S
Sbjct: 847 LLGLHYLKYFGSNKYILGSILLVMMSQVSLAS 878


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -2

Query: 163 FTFFL-MFNETS--LKADITRGYFFLFLLLRWVDELTAHLVLT 44
           F F+L +F++      +D+TR +FF  LL  W+  ++A +  T
Sbjct: 214 FQFYLKLFSQKDNVSSSDLTRWFFFYTLLYPWIALVSAFVAET 256


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 604 GGRDHSPPGVKWLLEPIDIYN 542
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,200
Number of Sequences: 5004
Number of extensions: 54430
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)