Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0744
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0271 + 27342468-27343577                                         29   3.5  
01_06_1749 - 39636951-39638102                                         29   4.6  
04_04_1310 - 32517074-32517193,32517295-32517360,32517468-325175...    28   8.0  

>02_05_0271 + 27342468-27343577
          Length = 369

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 420 YHHPAYFCREAVMRFGLKGGAAVVTILETLELISTAGGAFR 542
           +HH  +     ++RFG  GG A+   LE L L S++  AFR
Sbjct: 21  HHHHHHGASPDLLRFGGSGGGAMAARLEHL-LSSSSASAFR 60


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 502 SSIVTTAAPPFKPKRITA 449
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>04_04_1310 -
           32517074-32517193,32517295-32517360,32517468-32517558,
           32517741-32517870,32517944-32518032,32518300-32518376,
           32518539-32518607,32518800-32518874,32519040-32519135,
           32519232-32519396
          Length = 325

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 51  TRWAVSSSTHLSNKNKKKYPRVMSAFSE 134
           TRWAV  S  L   NK  +  +MSA S+
Sbjct: 283 TRWAVLFSASLLKNNKAAHEALMSAMSQ 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,486,340
Number of Sequences: 37544
Number of extensions: 332848
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)