Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0744
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.3  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 544 NLNAPPAVDISSKVSSIVTTAAPPFKPKRITASRQK*AGWWYLPVRTHKR 395
           N N  PAV + SK SSI        K    +  +   AG W  P+ T KR
Sbjct: 468 NFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKDSFAG-WTAPIYTLKR 516


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 544 NLNAPPAVDISSKVSSIVTTAAPPFKPKRITASRQK*AGWWYLPVRTHKR 395
           N N  PAV + SK SSI        K    +  +   AG W  P+ T KR
Sbjct: 468 NFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKDSFAG-WTAPIYTLKR 516


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 544 NLNAPPAVDISSKVSSIVTTAAPPFKPKRITASRQK*AGWWYLPVRTHKR 395
           N N  PAV + SK SSI        K    +  +   AG W  P+ T KR
Sbjct: 468 NFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKDSFAG-WTAPIYTLKR 516


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 551 HL*PKCTTRRRYKF*GLKYSYNSCPTFQTE 462
           H+ P+    RRY     +  Y+S P +Q +
Sbjct: 347 HVLPRLLVMRRYNTPSKRSDYDSRPQYQID 376


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 547 YNLNAPPAVDISSKVSSIV 491
           ++LN P  +DI S+++ I+
Sbjct: 275 FSLNGPDRIDILSQINGIL 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,707
Number of Sequences: 438
Number of extensions: 3764
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)