Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0743
         (786 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin...   410   e-113
UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protei...   250   3e-65
UniRef50_A2GVE7 Cluster: CMGC family protein kinase; n=2; Tricho...    35   2.0  
UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5; ...    34   3.5  
UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2; ...    33   6.1  
UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  
UniRef50_Q1FFI1 Cluster: RNA binding S1; n=7; Clostridiales|Rep:...    33   8.1  

>UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin -
           Spodoptera littoralis nuclear polyhedrosis virus (SlNPV)
          Length = 249

 Score =  410 bits (1009), Expect = e-113
 Identities = 180/240 (75%), Positives = 210/240 (87%)
 Frame = +1

Query: 4   YSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGP 183
           Y+Y+P +G+TYVYDNKYYKNLG +IKNAKRK   +E E +E++ D LD Y+VAEDPF+GP
Sbjct: 8   YNYSPHLGKTYVYDNKYYKNLGHVIKNAKRKHDALEREADERELDHLDKYLVAEDPFMGP 67

Query: 184 GKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVAN 363
           GKNQKLTLFKEIR+VKPDTMKLIVNW+GKEFLRETWTRF+EDSFPIVNDQEVMDV+LV N
Sbjct: 68  GKNQKLTLFKEIRNVKPDTMKLIVNWNGKEFLRETWTRFMEDSFPIVNDQEVMDVFLVVN 127

Query: 364 LKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNI 543
           ++PTRPNRC++FLAQHALR + +YVPH+VIRIVEPSYVG NNEYRISLAKKGGGCP+MN+
Sbjct: 128 MRPTRPNRCFRFLAQHALRCDPEYVPHDVIRIVEPSYVGTNNEYRISLAKKGGGCPVMNL 187

Query: 544 HSEYTNSFESFVNRVIWENFYKPIVYIGTDXXXXXXXXXXXXXXFKIKEFAPDAPLFTGP 723
           H+EYT SFESF+++VIW NFYKPIVY+GTD              FKIKEFAPDAPL+TGP
Sbjct: 188 HAEYTTSFESFIDKVIWYNFYKPIVYVGTDSAEEEEILLEVSLVFKIKEFAPDAPLYTGP 247


>UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protein;
           n=4; Nucleopolyhedrovirus|Rep: Polyhedrin, major
           occlusion body protein - Neodiprion lecontii NPV
          Length = 247

 Score =  250 bits (612), Expect = 3e-65
 Identities = 110/238 (46%), Positives = 161/238 (67%), Gaps = 1/238 (0%)
 Frame = +1

Query: 19  TIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQK 198
           T  ++Y+YDNKYY+ LG +I +AK++KH  + E+  ++   L+ +++  DP  GPGK+ K
Sbjct: 11  TSAKSYIYDNKYYRGLGDIINSAKKRKHDQDWEKHAEERRALNGFILPLDPRTGPGKHVK 70

Query: 199 LTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKPTR 378
           + +F+E+R++K +TMKL +NWSG+E+LRE WT F+ED+FPI N QE  DV+L     P +
Sbjct: 71  MVMFQEVRNIKANTMKLAINWSGREYLREVWTTFIEDTFPINNYQEFTDVFLEIRCTPNK 130

Query: 379 PNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYT 558
            NR Y+FLAQH LR +ED+VP + IR++EP Y+   N   +SL K+ GGCP+M I  ++ 
Sbjct: 131 SNRHYRFLAQHGLRMDEDFVPCDTIRVIEPEYL-QGNTVSLSLLKRDGGCPMMKIRQQFN 189

Query: 559 N-SFESFVNRVIWENFYKPIVYIGTDXXXXXXXXXXXXXXFKIKEFAPDAPLFTGPGV 729
               E FV+R++W +F++PIVYIGTD              F IKEFAP+AP   GPG+
Sbjct: 190 ELDLEQFVDRILWCHFHRPIVYIGTDSGEEEEVFIEASLTFIIKEFAPEAPFVNGPGM 247


>UniRef50_A2GVE7 Cluster: CMGC family protein kinase; n=2;
           Trichomonas vaginalis G3|Rep: CMGC family protein kinase
           - Trichomonas vaginalis G3
          Length = 340

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +1

Query: 82  NAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPD-TMKLIVN 258
           N ++     +H+  E QW+L DNY + +   +G GK    T+FK +   + +  +K++V 
Sbjct: 20  NQQKGPEWYDHKSYEPQWNLPDNYSLIKK--VGRGKYS--TVFKAVHKRRTECAIKILVP 75

Query: 259 WSGKEFLRE 285
              K +LRE
Sbjct: 76  LDPKRYLRE 84


>UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 468

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 265 GKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKP--TRPNRCYKFLAQHALRWEEDY 435
           G EFL   +T FV+ ++  +N++   D+Y  A ++    +   C  F A     ++E+Y
Sbjct: 103 GIEFLTNIFTEFVKSTYKEINEENFYDIYDCATIQNDINKVEECISFFASKMNDFQEEY 161


>UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 623

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 251 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKK 430
           SST +  S  +      + T++P  T K   T TS+PTS   + T A  ++ +       
Sbjct: 162 SSTASVSSTILSSTATTMVTSTPT-TEKSSTTTTSTPTSEATSTTTAMITTTSGTTENPT 220

Query: 431 TT-CPTK*SELWSHPT 475
           TT CPTK      HPT
Sbjct: 221 TTDCPTKVCRYGFHPT 236


>UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus niger|Rep: Putative uncharacterized protein
           - Aspergillus niger
          Length = 329

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +2

Query: 251 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSP-TSNPHAPTGATSSSLNTLL 418
           S++ + ++  ++L P++L  ASP  +T   +T T+SP TS P   + ATS  L  +L
Sbjct: 39  SNSSSPRTMHIRLPPLMLPGASPRLSTLEPFTTTTSPSTSFPSPSSSATSDPLADIL 95


>UniRef50_Q1FFI1 Cluster: RNA binding S1; n=7; Clostridiales|Rep:
           RNA binding S1 - Clostridium phytofermentans ISDg
          Length = 279

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
 Frame = +1

Query: 151 YMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVND 330
           Y  +ED  +      KLTL KEI  +K   +  I  +      ++ +  F E + P++ D
Sbjct: 56  YKDSEDRPIATQTTPKLTL-KEIAVLKVKEVTTIGAFLDWGIAKDLFLPFKEQTHPVIAD 114

Query: 331 QEVM-DVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEP--SYVGMNNEYRI 501
           +EV+  +Y+  + +     + Y  L   +   ++D V   V  I+    ++V ++N+Y  
Sbjct: 115 EEVLVSLYIDKSKRLCATMKIYDMLQTDSPYGKDDKVTGIVYEIIPAFGAFVAVDNKYSA 174

Query: 502 SLAKK 516
            +  K
Sbjct: 175 LIPNK 179


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 834,339,898
Number of Sequences: 1657284
Number of extensions: 17635646
Number of successful extensions: 49805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49730
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)