Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0741
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59670| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_57152| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.1e-25)        29   2.7  
SB_57671| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   4.8  
SB_17963| Best HMM Match : RVP (HMM E-Value=0.3)                       28   8.3  

>SB_59670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 53  GLR*SVNTRWAVSSSTHLSNKNKKKYPRVMSAFSEVSL-NIKKKVKCFYEV 202
           GLR  +N R+  SSS HL  +   K P+   + + + + NI+K+++   EV
Sbjct: 19  GLRCLLNLRYTGSSSLHLRLRIACKVPKSSKSLTRIKVKNIEKRIEIMAEV 69


>SB_57152| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.1e-25)
          Length = 316

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 649 FFFNSLNGXTRSQPTWC*VVTGAHRHL*PKCTTRRR 542
           FFF +L+  T+  P W    +  +R L PK + RR+
Sbjct: 66  FFFGNLHNLTQRAPRWAPKCSRGNRGLFPKVSERRK 101


>SB_57671| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 533

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 309 YLKNLFRNELLGLTTLFW 362
           YLK L R+ELLG+ TLFW
Sbjct: 22  YLK-LLRSELLGIPTLFW 38


>SB_17963| Best HMM Match : RVP (HMM E-Value=0.3)
          Length = 338

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 119 KKKYPRVMSAFSEVSLNIKKKVK 187
           KK+ PR+ S F +V+++IKK+ +
Sbjct: 288 KKREPRIASKFKQVTVHIKKRTQ 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,006,900
Number of Sequences: 59808
Number of extensions: 380044
Number of successful extensions: 786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)