Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0740
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   2.1  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   3.6  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    26   4.7  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    26   6.3  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    25   8.3  

>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +3

Query: 339 SKSVIFSDSLSCLQDITKFPSHSKVNFEIILKIKETLFQCHCSGLDVTLVWIPSHSGICG 518
           S   I  DS + +    K P+ S ++ E  +K + T   C     + TL     H  ICG
Sbjct: 29  STEQIIKDSENVVHTTLKLPT-STLSREFWMKDERTN-NCSLCETEFTLFRRKHHCRICG 86

Query: 519 NELADSCAKEA 551
             +   C KEA
Sbjct: 87  KIICKYCLKEA 97


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 118  IYNFRT*YNYNGLIIITYSLMHLNYPKMVL*VLR 219
            +Y+     N NG +++TY + ++NYP + + + R
Sbjct: 917  VYSVHLAMNGNGTLLLTYLVENMNYPHIPILLTR 950


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 4   LQFFNMINS-PSFFSLLTVFYFVPLPS*ILGSIK 102
           LQFF  ++  PS  SLL   + +PL + ILG  K
Sbjct: 767 LQFFKQLSMVPSSLSLLRKVHIIPLLTHILGDSK 800


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 537 CAKEAVVMGCNKYNKIFTRDLHSLAK 614
           C  + V+ GC +YN +   DLH + +
Sbjct: 119 CIFDLVIFGCLQYNMVSMDDLHVMQR 144


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 90  GIHKDSPVANLQFQNIVQLQWPNHYHLFTDASKLSQ 197
           GI+K SPV     ++I+QL  P+    F +   +S+
Sbjct: 312 GIYKLSPVYPYDLESIIQLSSPDKIMSFNEGDLISR 347


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -3

Query: 645 SFHSKIEAYQILPENVNLE*KFCYTCYSP*QQPPWH 538
           SFH       + PEN+     FC TC      PP H
Sbjct: 138 SFHLSCLEPPLTPENIPEGSWFCVTCSIKSHHPPKH 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,029
Number of Sequences: 5004
Number of extensions: 59552
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)