Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0740
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0377 - 22479800-22479872,22479920-22479981,22480007-224803... 30 2.1
01_06_1480 - 37660591-37660720,37660899-37660930,37661061-376611... 30 2.1
02_05_0109 - 25909126-25909308,25909454-25909660,25910130-259103... 29 3.7
04_04_0638 - 26877640-26877825,26877954-26878160,26878866-268789... 29 4.9
04_04_1270 - 32278793-32279095,32279177-32279327,32279427-322796... 28 6.5
04_04_0371 + 24771687-24772081,24772139-24772535,24773394-247734... 28 6.5
03_06_0397 - 33624883-33625484,33625569-33625632,33625663-336257... 28 8.6
>02_04_0377 -
22479800-22479872,22479920-22479981,22480007-22480300,
22481723-22481825,22481949-22482046
Length = 209
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 153 PNHYHLFTDASKLSQNGP-VGAAVWIPKFKISLKYKLPQTSSVYSGEAVALLEAALFIKT 329
PN+YH + +G +GA + + KLPQ+ V S + LLE F+
Sbjct: 112 PNYYHGAKTGQLATLHGAEIGATTEFTQMLVDGTTKLPQSLQVRSEPILCLLEMLFFLHP 171
Query: 330 RGLSK 344
G +K
Sbjct: 172 VGSTK 176
>01_06_1480 -
37660591-37660720,37660899-37660930,37661061-37661155,
37661460-37661527,37661608-37661694,37662884-37662912,
37663019-37663138,37663854-37663905,37663986-37664050,
37664174-37664536,37664637-37664711,37664803-37664940,
37665025-37665181,37665471-37665478,37665576-37665710,
37665965-37666082,37666791-37666915,37667571-37667717,
37668297-37668380,37668671-37668800,37669196-37669347,
37669678-37669857,37670660-37670731,37671104-37671295,
37671366-37671411,37671498-37671647,37671725-37671882,
37671995-37672101,37672191-37672407,37672484-37672696,
37672852-37672972,37673072-37673253,37673475-37673672,
37674770-37674967
Length = 1447
Score = 29.9 bits (64), Expect = 2.1
Identities = 31/96 (32%), Positives = 45/96 (46%)
Frame = +3
Query: 165 HLFTDASKLSQNGPVGAAVWIPKFKISLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSK 344
++F D ++LS G A V ++ IS K K Q G A + LF+K G +K
Sbjct: 572 NIFKDLTELSYEGSSFATVQSIRYSISKKVKFGQ--DFLHGSATSSHLHDLFLKRIG-NK 628
Query: 345 SVIFSDSLSCLQDITKFPSHSKVNFEIILKIKETLF 452
+++ C K SHS N+E+I I E LF
Sbjct: 629 HPLYN---FCKVLSVKC-SHSIFNWEMIYAILEVLF 660
>02_05_0109 -
25909126-25909308,25909454-25909660,25910130-25910336,
25910411-25910459,25911005-25911204,25911275-25911360,
25911441-25911597,25911808-25911972,25913254-25913490
Length = 496
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 429 LKIKETLFQCHCSGL-DVTLVWIPSHSGICGNELADSCAKEAVVMGCNKYN 578
LK +F+ HC L + + + + IC N ++ + KEA + C+ +N
Sbjct: 433 LKRMVRIFESHCGPLTQYGMKHMRAFANICNNGISGASMKEASIATCSSHN 483
>04_04_0638 -
26877640-26877825,26877954-26878160,26878866-26878925,
26879229-26879435,26879501-26879549,26880138-26880337,
26880425-26880510,26880585-26880741,26880920-26881084,
26881817-26882053
Length = 517
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 429 LKIKETLFQCHCSGL-DVTLVWIPSHSGICGNELADSCAKEAVVMGCNKYN 578
LK +F+ C L + ++ + + IC N ++++ EA + C +YN
Sbjct: 453 LKKMVRIFESQCGSLTQYGMKYMRAFANICNNGVSEAKMMEASINACGRYN 503
>04_04_1270 -
32278793-32279095,32279177-32279327,32279427-32279664,
32279778-32279988,32280067-32280248,32280332-32280448,
32280828-32282094
Length = 822
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +1
Query: 472 LMSLSSGSQVIAEFVGMSLLTPVPRRLLLW----AVTSITKFLLEIYILWQNLICFNLGM 639
++ L SGS++ + + M + R LW A + +LE Y + + L+C +LG+
Sbjct: 698 VLELISGSKISSPHLTMDFPNLIARAWSLWKDGNAEDFVDSIILESYAISEFLLCIHLGL 757
>04_04_0371 +
24771687-24772081,24772139-24772535,24773394-24773435,
24773571-24774305,24775357-24775480,24775613-24776580,
24776917-24776925
Length = 889
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 393 FPSHSKVNFEIILKIKETLFQCHCSGLDVTLVWIPSHSGICG 518
+ + K F IL + + CH L + L W+P+ +GI G
Sbjct: 280 YTENQKFAFTEILDVLRAI--CHAHMLPLALTWVPTSNGIDG 319
>03_06_0397 -
33624883-33625484,33625569-33625632,33625663-33625744,
33626081-33626649
Length = 438
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 526 LLTPVPRRLLLWAVTSITKFLLEIYILW 609
LLT +P+ + W+ ++T FL+ I I W
Sbjct: 297 LLTVIPQSVDYWSAFAVTLFLMGITISW 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,778,372
Number of Sequences: 37544
Number of extensions: 346260
Number of successful extensions: 857
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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