Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0740
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59610| Best HMM Match : RnaseH (HMM E-Value=4.4e-19)                33   0.23 
SB_58031| Best HMM Match : DB (HMM E-Value=1.5)                        31   0.72 
SB_10749| Best HMM Match : DB (HMM E-Value=1.5)                        31   0.72 
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_54427| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)                    28   8.8  

>SB_59610| Best HMM Match : RnaseH (HMM E-Value=4.4e-19)
          Length = 191

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
 Frame = +3

Query: 267 TSSVYSGEAVALLEAALFIKTRGLSKSVIFSDSLSCLQDITKFPSHSKVNFEIILKIKET 446
           TSS+ S    A   A    K  G +K  I +DS   +  +T +    K N       K+ 
Sbjct: 84  TSSLSSSHGSAATMALESAKEMGFTKVEIRTDSKYTINGMTSWIRSWKKNGWKTADNKDV 143

Query: 447 L----FQCH---CSGLDVTLVWIPSHSGICGNELADSCAK 545
                FQ     CS +DV    +  H+GI GNE+AD  AK
Sbjct: 144 KNLEDFQKLDKLCSEIDVHWTHVAGHAGIEGNEIADQLAK 183


>SB_58031| Best HMM Match : DB (HMM E-Value=1.5)
          Length = 297

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
 Frame = +3

Query: 387 TKFPSHSKVNFEIILKIKETLFQCHCSGLDVTLVWIPSHSGIC---GNELADSCAKEAVV 557
           T+  S    ++  + K +  LF+   SG  V  VWIP  S +C    N L  SC  E   
Sbjct: 189 TQMSSFKPSDYHALRKRRRELFEWRPSGDQVNKVWIP--SDVCCKDENNLCTSCTLETNY 246

Query: 558 MGCNK--YNKIFTRDLHSLAKSDML 626
             C+    N + T     L  + +L
Sbjct: 247 FKCSDKIENLVTTESKRELCSNGLL 271


>SB_10749| Best HMM Match : DB (HMM E-Value=1.5)
          Length = 616

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
 Frame = +3

Query: 387 TKFPSHSKVNFEIILKIKETLFQCHCSGLDVTLVWIPSHSGIC---GNELADSCAKEAVV 557
           T+  S    ++  + K +  LF+   SG  V  VWIP  S +C    N L  SC  E   
Sbjct: 403 TQMSSFKPSDYHALRKRRRELFEWRPSGDQVNKVWIP--SDVCCKDENNLCTSCTLETNY 460

Query: 558 MGCNK--YNKIFTRDLHSLAKSDMLQSWN 638
             C+    N + T     L  +    S N
Sbjct: 461 FKCSDKIENLVTTESKRELCSNGFQSSGN 489


>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 141 QLQWPNHYHLFTDASKL-SQNGPVGAAVWIPKFKISLKYKLPQTSSVYSGEAVA 299
           +L W NH H   D+ +L S NGP G         I+++Y++ +  SV S   +A
Sbjct: 290 RLHWRNHQHSKLDSKQLGSPNGPNGIGSDNVTSLIAIQYRVARYKSVRSAPYLA 343


>SB_54427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +3

Query: 192 SQNGPVGAAVWIPKFKISLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSKSVIFSDSLS 371
           S NGP  A      F  S K++  QTSS Y  ++  L+EAA+    + L K    S    
Sbjct: 703 SDNGPQFANAEYTTFASSWKFE-HQTSSPYHSQSNGLIEAAV-KSAKNLQKKANKSG--- 757

Query: 372 CLQDI-TKFPSHSKVNFEIILKIKETLFQ 455
             +D+   F  H     E IL +  +LFQ
Sbjct: 758 --RDVWMSFLDHRNTPTEAILVLVSSLFQ 784


>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 3404

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
 Frame = +3

Query: 276  VYSGEAVALLEAALFIKTRGLSKSVIFSDSLSCLQDITKFPSHSKVNFEIILKIKE-TLF 452
            V+S     L   A+ ++   L+K  ++ D L    + T      K+N EII  +K+ T+ 
Sbjct: 2513 VFSTRYAWLPHQAISVEADSLAKVAVWRDKLLVYTNNTLRIYSFKLNGEIINLVKKATIS 2572

Query: 453  QCHCSGLDVTLVW--IPSHSGICGNE--LADSCAKEAVVMGCNKYNKIFTRDLHSLAKSD 620
             C  S  +  + W  + S   +  N+  +    + +  V+G  +      R ++ L +++
Sbjct: 2573 NCKRSPCNADVSWSNMISKKSVIFNDTVVVSGMSADKGVLGVFQERYGAWRFVNELGRTE 2632

Query: 621  MLQSWNESWQISRQSV 668
               S+ ES+ I+ +++
Sbjct: 2633 SDPSFGESFAINDEAI 2648


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,601,342
Number of Sequences: 59808
Number of extensions: 407574
Number of successful extensions: 967
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)