Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0740
(722 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR541820-1|CAG46619.1| 286|Homo sapiens RNASEH1 protein. 50 8e-06
BT019670-1|AAV38476.1| 286|Homo sapiens ribonuclease H1 protein. 50 8e-06
BC002973-1|AAH02973.1| 286|Homo sapiens ribonuclease H1 protein. 50 8e-06
AF048995-1|AAC78564.1| 286|Homo sapiens ribonuclease H1 protein. 50 8e-06
AF048994-1|AAC78563.1| 286|Homo sapiens ribonuclease H1 protein. 50 8e-06
AF039652-1|AAC09261.1| 286|Homo sapiens ribonuclease H type II ... 50 8e-06
AC108488-1|AAX82026.1| 286|Homo sapiens unknown protein. 50 8e-06
AJ224117-1|CAA11835.1| 286|Homo sapiens RNase HII protein. 50 1e-05
AK027069-1|BAB15646.1| 171|Homo sapiens protein ( Homo sapiens ... 30 7.3
AK021593-1|BAB13849.1| 128|Homo sapiens protein ( Homo sapiens ... 30 9.6
>CR541820-1|CAG46619.1| 286|Homo sapiens RNASEH1 protein.
Length = 286
Score = 50.0 bits (114), Expect = 8e-06
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Frame = +3
Query: 222 WIPKFKISLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSKSVIFSDSLSCLQDITKFPS 401
W P +++ +LP + E A +A KT+ ++K V+++DS+ + IT +
Sbjct: 164 WGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQ 223
Query: 402 HSKVNF-------EIILKIKETLFQCHCSGLDVTLVWIPSHSGICGNELADSCAKE 548
K N E+I K + G+D+ + +P HSG GNE AD A+E
Sbjct: 224 GWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279
>BT019670-1|AAV38476.1| 286|Homo sapiens ribonuclease H1 protein.
Length = 286
Score = 50.0 bits (114), Expect = 8e-06
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Frame = +3
Query: 222 WIPKFKISLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSKSVIFSDSLSCLQDITKFPS 401
W P +++ +LP + E A +A KT+ ++K V+++DS+ + IT +
Sbjct: 164 WGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQ 223
Query: 402 HSKVNF-------EIILKIKETLFQCHCSGLDVTLVWIPSHSGICGNELADSCAKE 548
K N E+I K + G+D+ + +P HSG GNE AD A+E
Sbjct: 224 GWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279
>BC002973-1|AAH02973.1| 286|Homo sapiens ribonuclease H1 protein.
Length = 286
Score = 50.0 bits (114), Expect = 8e-06
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Frame = +3
Query: 222 WIPKFKISLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSKSVIFSDSLSCLQDITKFPS 401
W P +++ +LP + E A +A KT+ ++K V+++DS+ + IT +
Sbjct: 164 WGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQ 223
Query: 402 HSKVNF-------EIILKIKETLFQCHCSGLDVTLVWIPSHSGICGNELADSCAKE 548
K N E+I K + G+D+ + +P HSG GNE AD A+E
Sbjct: 224 GWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279
>AF048995-1|AAC78564.1| 286|Homo sapiens ribonuclease H1 protein.
Length = 286
Score = 50.0 bits (114), Expect = 8e-06
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Frame = +3
Query: 222 WIPKFKISLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSKSVIFSDSLSCLQDITKFPS 401
W P +++ +LP + E A +A KT+ ++K V+++DS+ + IT +
Sbjct: 164 WGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQ 223
Query: 402 HSKVNF-------EIILKIKETLFQCHCSGLDVTLVWIPSHSGICGNELADSCAKE 548
K N E+I K + G+D+ + +P HSG GNE AD A+E
Sbjct: 224 GWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279
>AF048994-1|AAC78563.1| 286|Homo sapiens ribonuclease H1 protein.
Length = 286
Score = 50.0 bits (114), Expect = 8e-06
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Frame = +3
Query: 222 WIPKFKISLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSKSVIFSDSLSCLQDITKFPS 401
W P +++ +LP + E A +A KT+ ++K V+++DS+ + IT +
Sbjct: 164 WGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQ 223
Query: 402 HSKVNF-------EIILKIKETLFQCHCSGLDVTLVWIPSHSGICGNELADSCAKE 548
K N E+I K + G+D+ + +P HSG GNE AD A+E
Sbjct: 224 GWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279
>AF039652-1|AAC09261.1| 286|Homo sapiens ribonuclease H type II
protein.
Length = 286
Score = 50.0 bits (114), Expect = 8e-06
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Frame = +3
Query: 222 WIPKFKISLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSKSVIFSDSLSCLQDITKFPS 401
W P +++ +LP + E A +A KT+ ++K V+++DS+ + IT +
Sbjct: 164 WGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQ 223
Query: 402 HSKVNF-------EIILKIKETLFQCHCSGLDVTLVWIPSHSGICGNELADSCAKE 548
K N E+I K + G+D+ + +P HSG GNE AD A+E
Sbjct: 224 GWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279
>AC108488-1|AAX82026.1| 286|Homo sapiens unknown protein.
Length = 286
Score = 50.0 bits (114), Expect = 8e-06
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Frame = +3
Query: 222 WIPKFKISLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSKSVIFSDSLSCLQDITKFPS 401
W P +++ +LP + E A +A KT+ ++K V+++DS+ + IT +
Sbjct: 164 WGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQ 223
Query: 402 HSKVNF-------EIILKIKETLFQCHCSGLDVTLVWIPSHSGICGNELADSCAKE 548
K N E+I K + G+D+ + +P HSG GNE AD A+E
Sbjct: 224 GWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279
>AJ224117-1|CAA11835.1| 286|Homo sapiens RNase HII protein.
Length = 286
Score = 49.6 bits (113), Expect = 1e-05
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Frame = +3
Query: 222 WIPKFKISLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSKSVIFSDSLSCLQDITKFPS 401
W P +++ +LP + E A +A KT+ ++K V+++DS+ + IT +
Sbjct: 164 WGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVR 223
Query: 402 HSKVNF-------EIILKIKETLFQCHCSGLDVTLVWIPSHSGICGNELADSCAKE 548
K N E+I K + G+D+ + +P HSG GNE AD A+E
Sbjct: 224 GWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279
>AK027069-1|BAB15646.1| 171|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23416 fis, clone HEP20790. ).
Length = 171
Score = 30.3 bits (65), Expect = 7.3
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 600 HSLAKSDMLQSWNESWQISR-QSVGKHYGNLQPTLPSKPW 716
H L +LQ W W++S+ + G+H + P +P +PW
Sbjct: 43 HILKHYFLLQKWRVQWEMSQINTPGRH--SKAPVMPPQPW 80
>AK021593-1|BAB13849.1| 128|Homo sapiens protein ( Homo sapiens
cDNA FLJ11531 fis, clone HEMBA1002661. ).
Length = 128
Score = 29.9 bits (64), Expect = 9.6
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 448 FFNVTAPDLMSLSSGSQVIAEFVGMSLLTPVPRRLLLW-AVTSITKFLLEIY 600
FF++ L+SLSSG ++ SL++ +PR +L+ A+ +++ F++ +Y
Sbjct: 17 FFHLFVSSLISLSSGLWFSSKRSFASLVSFIPRYFILFVAIMNVSLFMIWLY 68
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,674,085
Number of Sequences: 237096
Number of extensions: 1912113
Number of successful extensions: 4052
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4044
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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