Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0740
         (722 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       72   9e-13
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    71   2e-12
AY122230-1|AAM52742.1|  471|Drosophila melanogaster RE50383p pro...    29   6.4  
AE014296-130|AAF47408.1|  528|Drosophila melanogaster CG13894-PA...    29   6.4  

>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 71.7 bits (168), Expect = 9e-13
 Identities = 51/162 (31%), Positives = 80/162 (49%)
 Frame = +3

Query: 168  LFTDASKLSQNGPVGAAVWIPKFKISLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSKS 347
            ++TD SK++  G    AV     KI    +LP  +S+++ EA A+L+A  F  ++   KS
Sbjct: 965  IYTDGSKVT--GATTFAVVDSNRKIIAGGRLPSYNSIFTAEAFAILKACQFA-SKNAGKS 1021

Query: 348  VIFSDSLSCLQDITKFPSHSKVNFEIILKIKETLFQCHCSGLDVTLVWIPSHSGICGNEL 527
            VI +DSLS L  I  +  +     E+       +   H     +TL+W+PSH GI GNEL
Sbjct: 1022 VICTDSLSSLSAIRNWNHNDPTTQEV-----RHILSSHPK--KITLLWVPSHQGIHGNEL 1074

Query: 528  ADSCAKEAVVMGCNKYNKIFTRDLHSLAKSDMLQSWNESWQI 653
            AD  A+E  +     +    ++DL S  K  + +     W +
Sbjct: 1075 ADKAAQEMRLTPSILFTPFNSKDLKSRIKLYLKEKKLSEWAL 1116


>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
 Frame = +3

Query: 84   NIGIHKDSPVANLQFQNIVQLQWPN---HYHLFTDASKLSQNGPVGAAVWIPKFKISLKY 254
            ++ IHK    +  Q++ + +    N   H  +FTD SK++              K  +  
Sbjct: 920  SLRIHKKEQTSPDQYRKLYEHTKNNLKTHNFIFTDGSKINYTISFAITTETDVLKYGI-- 977

Query: 255  KLPQTSSVYSGEAVALLEAALFIKTRGLSKSVIFSDSLSCLQDITKFPSHSKVNFEIILK 434
             LP  SSV + E +A+LEA    K R   K +I SDSLS +  I    ++S     I   
Sbjct: 978  -LPPYSSVLTSETIAILEAIELTKNRR-GKFIICSDSLSAVDSIQNTNNNSFYPSRI--- 1032

Query: 435  IKETLFQCHCSGLDVTLVWIPSHSGICGNELADSCAKEAVVMGCNKYNKIFTRDLHSLAK 614
               +L   H     + ++WIP HSGI GNELAD  AK A  M       I T D+    K
Sbjct: 1033 --RSLITQHAP--KIKIMWIPGHSGIKGNELADQAAKSASSMPLILTPNINTTDIKKHLK 1088

Query: 615  SDMLQSWNE 641
            +D+     E
Sbjct: 1089 ADLATKQKE 1097


>AY122230-1|AAM52742.1|  471|Drosophila melanogaster RE50383p
           protein.
          Length = 471

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 135 IVQLQWPNHY---HLFTDASKLSQNG--PVGAAVWIPKFKISLKYKLPQTSSVYSGEAVA 299
           I   +W N +   HL   A KL+ N   P+G+++WIP     L +  P  S+    E VA
Sbjct: 152 IADNRWLNRFRETHLQGFAQKLASNQLKPLGSSLWIPDIVQDLAHLFPPASA----ERVA 207

Query: 300 LLE 308
            LE
Sbjct: 208 KLE 210


>AE014296-130|AAF47408.1|  528|Drosophila melanogaster CG13894-PA
           protein.
          Length = 528

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 135 IVQLQWPNHY---HLFTDASKLSQNG--PVGAAVWIPKFKISLKYKLPQTSSVYSGEAVA 299
           I   +W N +   HL   A KL+ N   P+G+++WIP     L +  P  S+    E VA
Sbjct: 152 IADNRWLNRFRETHLQGFAQKLASNQLKPLGSSLWIPDIVQDLAHLFPPASA----ERVA 207

Query: 300 LLE 308
            LE
Sbjct: 208 KLE 210


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,040,564
Number of Sequences: 53049
Number of extensions: 605403
Number of successful extensions: 1528
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)