BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0740 (722 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41508-1|AAG00027.3| 944|Caenorhabditis elegans Set (trithorax/... 31 0.83 U53150-1|AAA96123.2| 302|Caenorhabditis elegans Serpentine rece... 29 3.4 Z81531-1|CAB04314.2| 436|Caenorhabditis elegans Hypothetical pr... 28 5.9 AC006832-4|AAF39996.1| 485|Caenorhabditis elegans Hypothetical ... 28 7.8 >U41508-1|AAG00027.3| 944|Caenorhabditis elegans Set (trithorax/polycomb) domaincontaining protein 19 protein. Length = 944 Score = 31.1 bits (67), Expect = 0.83 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +3 Query: 453 QCHCSGLDVTLVWIPSHSGICGNELADSCAKEAVVMGCNKYNKI 584 Q H S T ++ + GN +++S AKEA+ MG N+ NK+ Sbjct: 43 QNHRSKWPETATFVTIERNVLGNYISES-AKEAIEMGLNRRNKV 85 >U53150-1|AAA96123.2| 302|Caenorhabditis elegans Serpentine receptor, class sx protein32 protein. Length = 302 Score = 29.1 bits (62), Expect = 3.4 Identities = 13/49 (26%), Positives = 21/49 (42%) Frame = +3 Query: 315 LFIKTRGLSKSVIFSDSLSCLQDITKFPSHSKVNFEIILKIKETLFQCH 461 LFIK + + + SCL D+ H N+ I + +T C+ Sbjct: 33 LFIKEKNFHSPCHYMITFSCLADMLHLCGHFVFNYHIFADVTDTQANCY 81 >Z81531-1|CAB04314.2| 436|Caenorhabditis elegans Hypothetical protein F36D3.1 protein. Length = 436 Score = 28.3 bits (60), Expect = 5.9 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +3 Query: 321 IKTRGLSKSVIFSDSLSCLQDITKFPSHSKVNFEIILKIKETL 449 ++ +GLSK F D + +I +P+HS++ EII + KETL Sbjct: 334 LRHKGLSKRAHFWDFELGMVEI--YPNHSQMIIEIIEEHKETL 374 >AC006832-4|AAF39996.1| 485|Caenorhabditis elegans Hypothetical protein ZK355.4 protein. Length = 485 Score = 27.9 bits (59), Expect = 7.8 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +3 Query: 3 SPIFQYDKFPLFLFSFDCLLFRPTTFLNIGI 95 +P+ YD LF +++CL+FR T N+ + Sbjct: 448 TPVALYDNPLLFQNNYECLMFRITYLTNVQV 478 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,699,232 Number of Sequences: 27780 Number of extensions: 318584 Number of successful extensions: 853 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 811 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 853 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1697838058 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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