Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0740
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set (trithorax/...    31   0.83 
U53150-1|AAA96123.2|  302|Caenorhabditis elegans Serpentine rece...    29   3.4  
Z81531-1|CAB04314.2|  436|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 19
           protein.
          Length = 944

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 453 QCHCSGLDVTLVWIPSHSGICGNELADSCAKEAVVMGCNKYNKI 584
           Q H S    T  ++     + GN +++S AKEA+ MG N+ NK+
Sbjct: 43  QNHRSKWPETATFVTIERNVLGNYISES-AKEAIEMGLNRRNKV 85


>U53150-1|AAA96123.2|  302|Caenorhabditis elegans Serpentine
           receptor, class sx protein32 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 315 LFIKTRGLSKSVIFSDSLSCLQDITKFPSHSKVNFEIILKIKETLFQCH 461
           LFIK +       +  + SCL D+     H   N+ I   + +T   C+
Sbjct: 33  LFIKEKNFHSPCHYMITFSCLADMLHLCGHFVFNYHIFADVTDTQANCY 81


>Z81531-1|CAB04314.2|  436|Caenorhabditis elegans Hypothetical
           protein F36D3.1 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +3

Query: 321 IKTRGLSKSVIFSDSLSCLQDITKFPSHSKVNFEIILKIKETL 449
           ++ +GLSK   F D    + +I  +P+HS++  EII + KETL
Sbjct: 334 LRHKGLSKRAHFWDFELGMVEI--YPNHSQMIIEIIEEHKETL 374


>AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK355.4 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 3   SPIFQYDKFPLFLFSFDCLLFRPTTFLNIGI 95
           +P+  YD   LF  +++CL+FR T   N+ +
Sbjct: 448 TPVALYDNPLLFQNNYECLMFRITYLTNVQV 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,699,232
Number of Sequences: 27780
Number of extensions: 318584
Number of successful extensions: 853
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)