Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0740
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66880.1 68414.m07601 serine/threonine protein kinase family ...    30   1.8  
At5g27340.1 68418.m03264 hypothetical protein                          28   5.5  
At5g19130.2 68418.m02277 GPI transamidase component family prote...    28   7.2  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    28   7.2  
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ...    27   9.5  
At2g04780.2 68415.m00489 fasciclin-like arabinogalactan-protein ...    27   9.5  
At2g04780.1 68415.m00488 fasciclin-like arabinogalactan-protein ...    27   9.5  

>At1g66880.1 68414.m07601 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 1296

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 381 DITKFPSHSKVNFEIILKIKE-TLFQCHCSGLDVTLVWIPSHSGICGNELADS-CAKEAV 554
           D+T   S  +  FE+ +K+ E T  +C  SG            G CG + +   C KEA 
Sbjct: 562 DVTNLESALREGFEVKVKVDEKTCQKCTSSG------------GTCGFQNSTQICCKEAS 609

Query: 555 VMGCNKYNKI 584
            +GCNK + +
Sbjct: 610 SLGCNKVHPL 619


>At5g27340.1 68418.m03264 hypothetical protein 
          Length = 238

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 423 IILKIKETLFQCHCSGLDVTLVWIP 497
           ++ K++E + + HC  +D+ L W P
Sbjct: 116 LLTKVREIVSRSHCKDIDIELDWCP 140


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
 Frame = +3

Query: 57  LLFRPTTFLNIGIHKDSP--VANLQFQNIVQLQWPNHYHLFTDA-SKLSQNGPVGAAVWI 227
           +L  P  F+N G ++D    + +  F  + ++ W +   ++  A S+     PV A  W+
Sbjct: 174 VLVTPYDFINGGDYEDLSLGIVSSLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAA--WL 231

Query: 228 -----PKFKISLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSKSVIFSDSLS 371
                P FK+S   K  + ++  +      + AAL +K  G S+   F D+LS
Sbjct: 232 TEYHSPSFKVSDLLKCDEQNTADNFRRAGTMAAALVLKVDGRSEK--FEDTLS 282


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
 Frame = +3

Query: 57  LLFRPTTFLNIGIHKDSP--VANLQFQNIVQLQWPNHYHLFTDA-SKLSQNGPVGAAVWI 227
           +L  P  F+N G ++D    + +  F  + ++ W +   ++  A S+     PV A  W+
Sbjct: 177 VLVTPYDFINGGDYEDLSLGIVSSLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAA--WL 234

Query: 228 -----PKFKISLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSKSVIFSDSLS 371
                P FK+S   K  + ++  +      + AAL +K  G S+   F D+LS
Sbjct: 235 TEYHSPSFKVSDLLKCDEQNTADNFRRAGTMAAALVLKVDGRSEK--FEDTLS 285


>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit, Arabidopsis thaliana (Ath-A)
          Length = 1088

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 194 PKWSCRCCGM 223
           PKW C CCGM
Sbjct: 668 PKWCCLCCGM 677


>At2g04780.2 68415.m00489 fasciclin-like arabinogalactan-protein
           (FLA7) identical to gi_13377782_gb_AAK20860
          Length = 254

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 99  KDSPVANL---QFQNIVQLQWPNHYHLFTDASKLSQNGPV 209
           K+ P++NL   Q + +V      HY+  ++   LSQ+GPV
Sbjct: 98  KNPPLSNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSGPV 137


>At2g04780.1 68415.m00488 fasciclin-like arabinogalactan-protein
           (FLA7) identical to gi_13377782_gb_AAK20860
          Length = 254

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 99  KDSPVANL---QFQNIVQLQWPNHYHLFTDASKLSQNGPV 209
           K+ P++NL   Q + +V      HY+  ++   LSQ+GPV
Sbjct: 98  KNPPLSNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSGPV 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925,585
Number of Sequences: 28952
Number of extensions: 300185
Number of successful extensions: 716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)