Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0739
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69646-4|CAD36489.1|  611|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z69646-3|CAA93476.2|  630|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF497829-1|AAM18107.1|  611|Caenorhabditis elegans putative Na-H...    28   6.9  
AF497828-1|AAM18106.1|  630|Caenorhabditis elegans putative Na-H...    28   6.9  

>Z69646-4|CAD36489.1|  611|Caenorhabditis elegans Hypothetical
           protein F57C7.2b protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 107 FSLHNYYFKNLSVSLPFF*LICFILSQYILCYIIQDYQ*LRNN--FFIFLVFRIIS 268
           ++ +N   ++ S +  FF ++ FI+  +I CYI        N    F FL+F +IS
Sbjct: 368 YTYNNLSDESQSNTKHFFHMVSFIMESFIFCYIGVSVFVTNNQRWSFSFLLFSLIS 423


>Z69646-3|CAA93476.2|  630|Caenorhabditis elegans Hypothetical
           protein F57C7.2a protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 107 FSLHNYYFKNLSVSLPFF*LICFILSQYILCYIIQDYQ*LRNN--FFIFLVFRIIS 268
           ++ +N   ++ S +  FF ++ FI+  +I CYI        N    F FL+F +IS
Sbjct: 368 YTYNNLSDESQSNTKHFFHMVSFIMESFIFCYIGVSVFVTNNQRWSFSFLLFSLIS 423


>AF497829-1|AAM18107.1|  611|Caenorhabditis elegans putative Na-H
           exchanger isoform 5b protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 107 FSLHNYYFKNLSVSLPFF*LICFILSQYILCYIIQDYQ*LRNN--FFIFLVFRIIS 268
           ++ +N   ++ S +  FF ++ FI+  +I CYI        N    F FL+F +IS
Sbjct: 368 YTYNNLSDESQSNTKHFFHMVSFIMESFIFCYIGVSVFVTNNQRWSFSFLLFSLIS 423


>AF497828-1|AAM18106.1|  630|Caenorhabditis elegans putative Na-H
           exchanger isoform 5a protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 107 FSLHNYYFKNLSVSLPFF*LICFILSQYILCYIIQDYQ*LRNN--FFIFLVFRIIS 268
           ++ +N   ++ S +  FF ++ FI+  +I CYI        N    F FL+F +IS
Sbjct: 368 YTYNNLSDESQSNTKHFFHMVSFIMESFIFCYIGVSVFVTNNQRWSFSFLLFSLIS 423


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,036,235
Number of Sequences: 27780
Number of extensions: 232975
Number of successful extensions: 392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)