Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0738
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2...    28   1.7  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    27   2.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.3  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    27   2.3  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    26   6.9  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   6.9  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   9.1  

>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
           L22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 611 NVFYIIKNGFLFYNSVIWLLTTIFFHYIFILISFYMEYDKNT 736
           N F  I  GFL  +S I L +  + HY F L+SF  E+   +
Sbjct: 5   NQFMKISKGFLVPSSTIGLNSKTY-HYKFPLLSFVREFSNGS 45


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 592 AINFKFKCILHNKKWISILQFSHLVIDYYFLSLHFYFDFILHGIR 726
           AI FKF   +++  WISI     +VI+ + +  +   +FIL  I+
Sbjct: 178 AITFKFWTEINSAAWISIFLAVVIVINLFGVRAYGEVEFILSTIK 222


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 514 ILKTI*SSLMKLPFYNTGHFKR-NLQLAINFKFKCILHNKKWISILQ 651
           +L++I  SL+KL F       R N   A++FK   +LH K+ + +L+
Sbjct: 649 LLESISYSLLKLFFKCANEGSRYNASAALSFKLSLMLHEKEEVLLLK 695


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 599 ILNSNVFYIIKNGFLF-YNSVIWL 667
           IL  +   I +NGF F YNS++WL
Sbjct: 234 ILMKDYHNIAENGFFFGYNSIVWL 257


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = +2

Query: 545 SCHFIIPAISNVIYSWQ*---ILNSNVFY--IIKNGFLFYNSVIWLLTTIFFHYIFI 700
           S +  I  I +++Y W     IL ++V++  II+NG ++   ++  L T+  +++F+
Sbjct: 322 SLNIYIGLIYSILYLWFEAFPILFTSVYHFTIIENGLVYLGILVGALITLACYFVFL 378


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 638  FLFYNSVIWLLTTIFFHYIFILISFYMEYDKN 733
            F FY +VIW  T I F Y      FY E+D N
Sbjct: 1095 FFFYKNVIW--TFILFWY-----QFYNEFDGN 1119


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +2

Query: 557 IIPAISNVIYSWQ*ILNSNVFYIIKNGFLFYNSVIWLLTTIFFHYIFILISFYMEYDKNT 736
           I P ++   Y W  IL +  F I+ + F+   SVI +++ +F H  + L+   ++  K T
Sbjct: 334 IHPVVAYAFYVW--ILPA--FRILFSIFMASMSVIIVVSEVFLHTQYSLVGIILQ--KFT 387

Query: 737 NSYA 748
           NS A
Sbjct: 388 NSSA 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,298
Number of Sequences: 5004
Number of extensions: 59574
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)